CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB1_BURCM (3-deoxy-manno-octulosonate cytidylyltransferase 1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=kdsB1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMR 425
            LI+P ++  V   L A PD   +TA   +    D F+PN VK  +D    A+YFSR  IP+++          S    P FP   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V+  +H    G+D P D+ ++++  R
Sbjct:  107 LIDPVLVRDVASHLAAHPDCAIATAAHPIHDAADVFNPNVVKVALDARNVAMYFSRAPIPWSRDAYLPHWPDVSAMPAPAFPVHRHIGLYAYRARFLRTYPSLAQAPVEQAEQLEQLRAMWHGERIAVLITEHAPEAGIDTPADLARVQALFR 259          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 3
Query:   33 VKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            V AL    +A  +T  T++ K ED F+PN VK V + HG A+YFSR  IP+N+     + +  P  P+L H+G+ + ++ FL+ +  + P  L+  E LEQL+VLE G+++ V I  +H   G+D PED+ K E  + +
Sbjct:  113 VAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNTHGEALYFSRAPIPWNRDTFATTREPTPLGPWLRHIGLYACNAGFLQRFTTMQPGTLEQIESLEQLRVLEAGHRIAVRITPEHFPPGIDTPEDLAKAEKALED 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_XYLF2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain M23) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 3
Query:   33 VKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            V AL    +A  +T  T++ K ED F+PN VK V + HG A+YFSR  IP+N+     + +  P  P+L H+G+ + ++ FL+ +  + P  L+  E LEQL+VLE G+++ V I  +H   G+D PED+ K E  + +
Sbjct:  118 VAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNTHGEALYFSRAPIPWNRDTFATTREPTPLGPWLRHIGLYACNAGFLQRFTTMQPGTLEQIESLEQLRVLEAGHRIAVRITPEHFPPGIDTPEDLAKAEKALED 256          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PARD8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-----PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN---PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            I PE I   +K   A  +   +T V   + +D F+     PN  K V++ +  A+YFSR +IPY +  K     P   +  H+G+ +Y +  LK    L  + L+L E LEQL+ LENGYK+KV   + E  G+D PED+EK  +F+  R
Sbjct:  103 IHPEQIQ-TIKTCFADANTQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPYIRGKKYTEWLPSHTFYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKVGITEQETIGIDTPEDMEKALAFLANR 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DESVV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 51/144 (35.42%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 434
            ++P ++D +V     A   V +T   +L  ++A  P+RVK VV  +G A+YFSR  IP+ + G V       L H+G+ ++    L+ +  L P+ L+  E LEQL++LENG  ++V+   +  HGVD PED++ I + +RE +
Sbjct:  109 LDPRMLDQLVAPFADASVRV-ATLAMALSAQEAQSPDRVKVVVAANGDALYFSRADIPFVRDGDVGGDTAGRLGHIGLYAFRMEALRRFTQLPPSRLEQTEKLEQLRLLENGIAIRVVPTTYRTHGVDRPEDIDVIINLLREND 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DESVH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 51/144 (35.42%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 434
            ++P ++D +V     A   V +T   +L  ++A  P+RVK VV  +G A+YFSR  IP+ + G V       L H+G+ ++    L+ +  L P+ L+  E LEQL++LENG  ++V+   +  HGVD PED++ I + +RE +
Sbjct:  109 LDPRMLDQLVAPFADASVRV-ATLAMALSAQEAQSPDRVKVVVAANGDALYFSRADIPFVRDGDVGGDTAGRLGHIGLYAFRMEALRRFTQLPPSRLEQTEKLEQLRLLENGIAIRVVPTTYRTHGVDRPEDIDVIINLLREND 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLPN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia pneumoniae GN=kdsB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422
            +  E++D +V+ L+++P+A   T V  +   E+     +VKCV D+ G A+YFSR  IP+     +    P  LH+G+ ++    L  Y     TPL   EDLEQL+ LE+G K+ V  VD ++  VD PED+ K+E ++
Sbjct:  111 LNSEVVDALVQKLRSSPEAELVTPVALTTDREEILTEKKVKCVFDSEGRALYFSRSPIPFI----LKKATPVYLHIGVYAFKREALFRYLQHSSTPLSDAEDLEQLRFLEHGGKIHVCIVDAKSPSVDYPEDIAKVEQYI 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB1_BURA4 (3-deoxy-manno-octulosonate cytidylyltransferase 1 OS=Burkholderia ambifaria (strain MC40-6) GN=kdsB1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMR 425
            LI+P ++  V   L A PD   +TA   +    D F+PN VK  +D    A+YFSR  IP+++   +           P FP   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V+  +H    G+D P D+ ++++  R
Sbjct:  107 LIDPMLVRDVASHLAAHPDCAIATAAHPIHDAADVFNPNVVKVALDARNVAMYFSRAPIPWSRDAYLPHWPDVATMPPPAFPVHRHIGLYAYRARFLRTYPSLAQAPVEQAEQLEQLRAMWHGERIAVLITEHAPEAGIDTPADLARVQALFR 259          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa (strain M12) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 3
Query:   33 VKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            V AL    +A  +T  T++ K ED F+PN VK V + HG A+YFSR  IP+N+     + +  P  P+L H+G+ + ++ FL+ +  + P  L+  E LEQL+VLE G+++ V I  +H   G+D PED+ K E  + +
Sbjct:  118 VAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNAHGEALYFSRAPIPWNRDTFATTREPTPLGPWLRHIGLYACNAGFLQRFTTMQPGTLEQIESLEQLRVLEAGHRIAVRITPEHFPPGIDTPEDLAKAEKALED 256          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_POLNA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPY------LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKI 410
            LI P +ID V + L+A PD   STA  S+    D  +PN VK V+D    A+YFSR  IP  +       + +      L H+GI +Y   FL+ +P L   PL+  E LEQL+ L +GY++ V   +H    GVD PED+E++
Sbjct:  103 LINPALIDAVARQLEARPDCAMSTAAHSIDELADFLNPNVVKVVLDARQTALYFSRAPIPAARDLAGQAWWKHGNLPKPLRHVGIYAYRVGFLRQFPQLPQAPLEQLESLEQLRALWHGYRIAVHITEHAPGPGVDTPEDLERV 246          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB1_BURCM6.718e-1832.683-deoxy-manno-octulosonate cytidylyltransferase 1 ... [more]
KDSB_XYLFT8.773e-1838.133-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XYLF28.773e-1838.133-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PARD88.773e-1836.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESVV1.146e-1735.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESVH1.146e-1735.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLPN1.146e-1736.433-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB1_BURA41.146e-1732.033-deoxy-manno-octulosonate cytidylyltransferase 1 ... [more]
KDSB_XYLFM1.497e-1738.133-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_POLNA1.497e-1738.893-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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