CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLT3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 3
Query:    3 LIEPEIIDGVVKAL---QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            LI PE+ID  +       A P A     + S  PE   +PN VK V D +GYA+YFSR  IPY ++    P+     H+G+ ++    L+ +  L P+ L+  E LEQL++LENG ++K +  + ++  VD  +D+ K+++ + ++
Sbjct:  101 LIPPEMIDSAILPFIENAALPCATLIQPIVSDVPEILQNPNVVKVVTDKNGYALYFSRSPIPYQRNSDAQPKI--FRHIGLYAFRKPALETFTTLPPSMLEETERLEQLRLLENGIRIKCVITNLDSQAVDTADDLAKVKAILAKK 244          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBPA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio parahaemolyticus GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 431
            L+ P II  V   L AA DA  +T    ++ ED  F+PN VK V D  GYA+YFSR  IP+++            P + H+GI +Y + F+  Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD PED+E + + + ++
Sbjct:  103 LVPPVIIRQVADNL-AASDAPMATLAVEIESEDEVFNPNAVKVVADERGYAMYFSRATIPWDRDNFAKQDKAIVNPLMRHIGIYAYRAGFINTYVNWAPSALEQIECLEQLRVLWYGEKIHVAVAKEAPAAGVDTPEDLEAVRAIVAKK 250          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 431
            LI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +   + ER
Sbjct:  103 LIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 431
            LI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +   + ER
Sbjct:  103 LIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VIBC3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRER 431
            LI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +   + ER
Sbjct:  103 LIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae GN=kdsB PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++          KV     YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+ + +
Sbjct:  103 LIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HAEI8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+ + +
Sbjct:  103 LIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_FRAP2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 55/141 (39.01%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP---YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK-VDHEAHGVDAPEDVEKI 410
            LI  E I+   + L   P+AV ST    + + ED ++PN VK V D + YA+YFSR  IP+ +    N Q     +  H+GI +Y   FLK Y  L  +P++  E LEQL+VL NGYK+ + +       GVD  +D+EK+
Sbjct:  104 LIPVENIEQAAQLLIEKPEAVVSTLCERITEAEDIYNPNNVKVVFDKNNYALYFSRASIPFERGFSENHQVSISEFFRHIGIYTYRVGFLKHYAELAISPIEKYEALEQLRVLYNGYKIAIEQSAKPTPAGVDTLQDLEKV 244          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLCV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila caviae GN=kdsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 422
            ++  ++D +V+ L+  P+    T V           N +VKCV D +G A+YFSR  IP+     +  + P  LH+G+ ++  N L  Y    PTPL   EDLEQL++LE+G  + V  V+ ++  VD PED+ K+E ++
Sbjct:  111 LQHTVVDALVRKLEEFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPHI----LKKETPIYLHIGVYAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGSIHVCVVEAKSPSVDYPEDINKVEKYL 246          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PHOLL (3-deoxy-manno-octulosonate cytidylyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 56/147 (38.10%), Postives = 79/147 (53.74%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            LI  EII  V + L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+ +   +  +      +L H+GI +Y + F++ Y    P+PL+  E LEQL+VL  G K+ V I +     GVD PED+  I     E
Sbjct:  102 LIPEEIIKQVAENLAGCKAGMATLAVQIHDAEEAFNPNAVKVVMDKQGYALYFSRATIPWERGRFIQSRETIGDNFLRHIGIYAYRAGFIRRYVQWEPSPLEQIEMLEQLRVLWYGEKIHVGIALKAPGVGVDTPEDLAAIRKVFTE 248          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_CHLT31.497e-1733.563-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBPA1.955e-1737.583-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCM1.955e-1738.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCH1.955e-1738.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBC31.955e-1738.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEIN1.955e-1738.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_HAEI81.955e-1738.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FRAP21.955e-1739.013-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLCV1.955e-1735.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PHOLL2.553e-1738.103-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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