CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain PittGG) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 58/145 (40.00%), Postives = 79/145 (54.48%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 410
            LI P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL H+GI +Y S F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+
Sbjct:  103 LIPPVIVRQVADNLAKFNVNMASLAVKIHDGEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLRHIGIYAYRSGFIKQYMQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKV 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECO5E (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE--AHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V  V HE    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAKGLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHV-AVAHEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECO57 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O157:H7 GN=kdsB PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE--AHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V  V HE    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAKGLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHV-AVAHEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_XYLFA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Xylella fastidiosa GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = 3
Query:   33 VKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            V AL    +A  +T  T++ K ED F+PN VK V + HG A+YFSR  IP+N+     + +  P  P+L H+G+ + ++ FL+ +  + P  L+  E LEQL+VLE G+++ V I  +H   G+D PED+ + E  + +
Sbjct:  118 VAALLHHSNADMATLATTIDKSEDLFNPNIVKLVCNAHGEALYFSRAPIPWNRDTFATTPEPTPLGPWLRHIGLYACNAGFLQRFTTMQPGTLEQIESLEQLRVLEAGHRIAVRITPEHFPPGIDTPEDLARAEKALED 256          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SHIDS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 59/147 (40.14%), Postives = 80/147 (54.42%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE--AHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+ +     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V  V HE    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWERDRFAKGLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHV-AVAHEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECOSE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain SE11) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECOLI (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12) GN=kdsB PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECOLC (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECOHS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECODH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_HAEIG2.553e-1740.003-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO5E2.553e-1740.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO572.553e-1740.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_XYLFA3.334e-1737.413-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHIDS3.334e-1740.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOSE3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOLI3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOLC3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOHS3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECODH3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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