CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECOBW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECO8A (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O8 (strain IAI1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECO55 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ECO24 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E++ + MR
Sbjct:  103 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 41/107 (38.32%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  108 DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 428
            DP+ VK V+D++GYA+YFSR  IP  +   ++  F    H+GI ++    L+ + GL P+ L+ EE LEQL++LENG++++ ++   ++ GV+ PE++E +    RE
Sbjct:  139 DPHIVKAVIDSNGYALYFSRSPIPCRRGANLSTTF--YRHIGIYAFQREVLQKFAGLEPSMLEKEESLEQLRLLENGFRIQCVETTVDSPGVNTPEELEFVRRIFRE 243          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_BURVG (3-deoxy-manno-octulosonate cytidylyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEKIESFMR 425
            LI+P ++  V   L A PD   +TA   +    D F+PN VK  +D    A+YFSR  IP+++          +    P FP   H+G+ +Y + FL+ YP L   P++  E LEQL+ + +G ++ V+  +     GVD P D+ ++++  R
Sbjct:  107 LIDPTLVRDVASHLAAHPDCAIATAAHPIHDAADVFNPNVVKVALDARSVAMYFSRAPIPWSRDAYQPHWPDVAAMPAPAFPVYRHIGLYAYRARFLRTYPSLAQAPIEQAEQLEQLRAMWHGERIAVLITERAPEAGVDTPADLARVQALFR 259          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_TOLAT (3-deoxy-manno-octulosonate cytidylyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP----QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI P II  V   L      + + AV      + F+PN VK V+D  GYA+YFSR  IP+++ G        +  +L H+GI +Y + F++ Y     +PL+  E LEQL+VL +  K+ V +  ++   GVD  ED+EK+  F+
Sbjct:  103 LIPPAIITQVADNLANTSAPMATLAVAIEDEHELFNPNAVKVVMDKQGYALYFSRATIPWDRDGFAQQPKQWRHTFLRHIGIYAYRAGFIRQYVSWPVSPLEQIESLEQLRVLWHSEKIHVAVAAENPPAGVDTAEDLEKVRRFL 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_RALPJ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Ralstonia pickettii (strain 12J) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK--------SGKVN----PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFMRE 428
            LI P +ID V   L+  PD   +TA   +  P D F+PN VK V+D    A+ FSR  +P+ +        +G V     P  P L H+GI +Y + FL+ +P L   P++  E LEQL+ + +G ++ V+  D   A GVD PED+ ++ +   E
Sbjct:  106 LIAPTLIDNVAAHLRDHPDCAIATAAHPIHDPADVFNPNVVKVVLDAADRALLFSRAPLPWARDTWTPAVMAGSVAERPLPAMPVLRHIGIYAYRAGFLRRFPQLAAAPIEQTEQLEQLRAMWHGERIAVLTTDDAPAAGVDTPEDLTRVRAAWAE 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_POLSQ (3-deoxy-manno-octulosonate cytidylyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            LI PE+I+ V + L   P    ST AV   +P +  + N VK V++  G A+YFSR  IPY +  +   +  +L HLGI +Y ++FL+ Y  L P P +  E LEQL+ L NGY++ V    +    GVD  +D+E++   +
Sbjct:  110 LIPPELINQVAQTLAEHPQCAISTVAVLISEPSEIDNSNVVKVVLNREGEALYFSRAPIPYVRDPQELIKTEHLRHLGIYAYRADFLQAYTRLDPAPPEQAEALEQLRALWNGYRIAVHTAPEAPPAGVDTLDDLERVRQLL 251          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_LEPCP (3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN-----PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 410
            LIEP +ID     L    D V STA  +L   + + +PN VK V D  G A+YFSR  +P+ + G  +     P    L H+GI  Y + FL+ +P L  +PL+  E LEQL+VL +G ++ V +       G+D PED+E++
Sbjct:  124 LIEPGLIDACAGLLAQRSDCVMSTAAHALDDVEEYGNPNVVKVVTDAVGRALYFSRAPLPWWRDGYASGVLALPDPAPLRHIGIYGYSAGFLRRFPSLPESPLERIESLEQLRVLWHGERIAVHLSAVRPGPGIDTPEDLERV 266          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_ECOBW3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO8A3.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO553.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO243.334e-1738.363-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLPB3.334e-1738.323-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_BURVG3.334e-1732.033-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_TOLAT4.354e-1735.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RALPJ4.354e-1735.263-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_POLSQ4.354e-1737.323-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_LEPCP4.354e-1737.763-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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