CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_HAEIE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus influenzae (strain PittEE) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 410
            LI P I+  V   L      + S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+EK+
Sbjct:  103 LIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQNVQKVQLADAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKV 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_ENTS8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMR 425
            +I P II  V + L +A   + + AV     ++AF+PN VK V+D  GYA+YFSR  IP+++      +      +L H+GI  Y + F++ Y     +PL+  E LEQL+VL +G K+ V +       GVD PED+E++ + MR
Sbjct:  103 MIPPAIIRQVAENLASAQAGMATLAVPVHDAQEAFNPNAVKVVMDAQGYALYFSRATIPWDRDRFAQSRDTIGDSFLRHIGIYGYRAGFIRRYVTWPASPLEQIEMLEQLRVLWHGEKIHVAVAAVVPGTGVDTPEDLERVRAEMR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DELAS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----------------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIES 416
            LI P++ID V   L   P A   TA  ++    D  +PN VK V D  G A YFSR  IP+ +                +   +P F  L H+GI SY + FL+ +P L P P ++ E LEQL+ L +G+++ V    H    GVD PED+E++ +
Sbjct:  106 LIAPDLIDAVAALLPQQPSASMGTAAHAIDSLADFTNPNVVKVVCDAQGMAHYFSRAPIPFAREHAGQAWWEAASAAASAAPGHPGFAPLRHIGIYSYRAGFLRSFPQLSPAPTEVLEALEQLRALWHGHRIAVHLTPHAPGPGVDTPEDLERVRA 261          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=kdsB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 434
            LI  E ID  ++   +      ST V  L+P+D     DPN+VK V++  GYA+YFSR  IP+ ++   + Q     H+G+ ++ +  L+ +  L PT L+  E LEQL++LE+GY+++ +    +  GV+  ED+E + +  ++R+
Sbjct:  101 LISHETIDLALEPFFSPNPPDCSTLVFPLQPDDWAQLHDPNQVKVVLNREGYALYFSRSPIPFQRNQLTSTQC--YRHVGLYAFKAEVLQCFAALPPTMLEEAESLEQLRLLEHGYRIRCMVTHDDQPGVNTAEDLELVRTLFKQRH 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SODGM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Sodalis glossinidius (strain morsitans) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG----KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFMRE 428
            LI P+II  V   L  A   + + AV     E+AF+PN VK VVD  GYA+YFSR  IP+++ G    + +     L H+GI +Y ++F++ Y     +PL+  E LEQL+VL  G K+ V +       GVD PE++ ++    ++
Sbjct:  103 LIPPQIILQVADNLAGAEAGMATLAVPITTAEEAFNPNAVKVVVDARGYALYFSRATIPWDREGFARSREHLSHSLLRHIGIYAYRADFIRRYVSWSASPLEKIEILEQLRVLWYGEKIHVAVSSVAPGMGVDTPEELAQVRLLQQQ 249          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DESAA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            + +PE ID V   L   P    +T   ++  E +  DP  VK V D  G+A+YFSR  IP+++ G  N +F    HLG+ +Y  +FL  +  L    L+  E LEQL+ LE G  +K +   +++  VD PED+ +IE+ ++++
Sbjct:  104 VFDPECIDEVTAPLIGDPGTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALYFSRATIPHDRDG--NMEFDTYKHLGVYAYTMDFLAEFCSLPEGHLEKIEKLEQLRALEYGLGIKTVVTAYDSPEVDLPEDIARIEALLKDQ 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHLL2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425
            LI+P  ID  ++   A      ST V  L PED     DPN VK V+D +G A+YFSR  +P+ +      QF    H+G+ ++ +  L+ Y  L P+ L+  E LEQL++LENG+ ++ +    +  GV+ PED++ +   +R
Sbjct:  101 LIDPRNIDLCLEPFLADNPPDCSTLVYPLLPEDFQQIDDPNVVKVVLDRNGNALYFSRSPVPFQREVYAATQF--YRHIGLYAFSAEVLQHYASLPPSMLEKAESLEQLRLLENGFSIRCVTTTVDHPGVNTPEDLDLVRRMLR 242          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_YERE8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 422
            L+ PEII  V + L A+   + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+ +      K      +L H+GI +Y + F++ Y    P+ L+  E LEQL+VL  G K+ V +     A GVD  ED++++ + M
Sbjct:  103 LVPPEIIRQVAENLAASSAGMATLAVPIESSEEAFNPNAVKVVMDAQGYALYFSRAAIPWERERFAQSKETIGDCFLRHIGIYAYRAGFVRRYVNWAPSQLEQIELLEQLRVLWYGEKIHVAVAKAVPAVGVDTQEDLDRVRAIM 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_METFK (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSG-----KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKIES 416
            LI+P +I  V   L A  +A  +TA   L    +  +PN VK V+D  G+A+YFSR  IPY +        + P  P   H+GI +Y + FL+ Y  L P+ ++  E LEQL+VL +GYK+ V I     A GVD   D+  + S
Sbjct:  103 LIDPRLIGEVAGNLSAHAEASMATACHVLHDTPSILNPNIVKVVLDQQGHALYFSRAPIPYPRDAFAANQDIPPGMPIYRHIGIYAYRAGFLRAYAALTPSAIEYFESLEQLRVLWHGYKISVEITEKAPASGVDTEADLAYVRS 247          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_METCA (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylococcus capsulatus GN=kdsB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER 431
            ++  ++  + +AL    D   +T    + +PE+ FDPN VK V D    A+YFSR  +P+++      +G   P  PY  H+G+ +Y +++L+ Y  L P+PL+  E LEQL++L +G ++ V+ V+   A GVD   D+E+    +  R
Sbjct:  106 MDAALLRALAEALGRREDCRVATLAAPIHRPEEIFDPNVVKVVTDGENRALYFSRAAVPWDRESFAEGAGVPMPGMPYRRHIGVYAYTASYLRRYVDLEPSPLEHVERLEQLRILWHGDRILVVPVEGAPAPGVDTAADLERARRHLSGR 255          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_HAEIE4.354e-1739.313-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ENTS84.354e-1736.993-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DELAS4.354e-1735.903-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLCH4.354e-1733.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SODGM5.687e-1736.733-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DESAA5.687e-1734.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLL25.687e-1735.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_YERE87.427e-1737.933-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METFK7.427e-1737.933-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METCA7.427e-1732.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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