CF417463

Overview
NameCF417463
Unique NameCF417463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CF417463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
H2AZ_MOUSE1.121e-1484.09Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2[more]
H2AZ_HUMAN1.121e-1484.09Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2[more]
H2AZ_CHICK1.121e-1484.09Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AZ_BOVIN1.121e-1484.09Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2[more]
H2AV_XENTR1.121e-1484.09Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ... [more]
H2AV_XENLA1.121e-1484.09Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3[more]
H2AV_PAGMA1.121e-1484.09Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3[more]
H2AV_MOUSE1.121e-1484.09Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN1.121e-1484.09Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE1.121e-1484.09Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-393 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417463 ID=CF417463; Name=CF417463; organism=Citrus sinensis; type=EST; length=360bp
GTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTT
GACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATAT
CCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGT
CATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATC
TAAATGAGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCT
TCAATCCTCATTTCATGCAGCGACGAATTATGGTGCTTGTTTTTTCCCAT
GTTGGTATTGAACTGTTACTGTTTAATTTTTAAATAATTCTATATCTGTT
TCTTTGTTTG
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