CF417463

Overview
NameCF417463
Unique NameCF417463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.465e-14
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K   +
Sbjct:   79 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQ 122          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.913e-14
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 131
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  +
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEE 124          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.263e-14
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGKKGQQ 125          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.261e-14
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            I+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.261e-14
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            I+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 122
            ITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:   84 ITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI   SK+
Sbjct:   88 ITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSKK 131          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 128
            ITPRHLQLAIRGDEELD LI+ TIAGGGV+PHIHKSL+ K++
Sbjct:   87 ITPRHLQLAIRGDEELDLLIRATIAGGGVLPHIHKSLVAKNA 128          
The following BLAST results are available for this feature:
BLAST of CF417463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
H2AV_CHICK1.121e-1484.09Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN1.121e-1484.09Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_STRPU1.465e-1484.09Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]
H2AV_DROME1.913e-1486.05Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_RABIT3.263e-1481.82Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AZL_XENTR4.261e-1481.82Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA4.261e-1481.82Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_CAEEL1.619e-1387.50Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AZ_USTMA2.115e-1375.00Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AZ_CRYNE2.115e-1380.95Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-393 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417463 ID=CF417463; Name=CF417463; organism=Citrus sinensis; type=EST; length=360bp
GTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTT
GACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATAT
CCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGT
CATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATC
TAAATGAGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCT
TCAATCCTCATTTCATGCAGCGACGAATTATGGTGCTTGTTTTTTCCCAT
GTTGGTATTGAACTGTTACTGTTTAATTTTTAAATAATTCTATATCTGTT
TCTTTGTTTG
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