CF417463

Overview
NameCF417463
Unique NameCF417463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.711e-13
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 128
            ITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K S
Sbjct:   92 ITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGKHS 133          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLI+ TIAGGGV+PHI+K L+ ++ ++
Sbjct:   89 ITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLLIRTKEK 132          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   86 ITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   86 ITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   86 ITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   86 ITPRHLQLAIRGDEELDNLIKATIAFGGVLPHINKALLLKVEKK 129          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_CANAL (Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   86 ITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2A8_ARATH (Putative histone H2A.8 OS=Arabidopsis thaliana GN=At4g13570 PE=5 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 104
            ITPRHLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct:   85 ITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   87 ITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   87 ITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
The following BLAST results are available for this feature:
BLAST of CF417463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
H2AV_TETTH4.711e-1383.33Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_SCHPO2.338e-1272.73Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AZ_PICST1.160e-1175.00Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_PICGU1.160e-1175.00Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2AZ_LODEL1.160e-1175.00Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AZ_DEBHA1.160e-1175.00Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_CANAL1.160e-1175.00Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=... [more]
H2A8_ARATH1.160e-1194.12Putative histone H2A.8 OS=Arabidopsis thaliana GN=... [more]
H2AZ_YEAST1.979e-1170.45Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_KLULA1.979e-1170.45Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-393 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417463 ID=CF417463; Name=CF417463; organism=Citrus sinensis; type=EST; length=360bp
GTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTT
GACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATAT
CCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGT
CATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATC
TAAATGAGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCT
TCAATCCTCATTTCATGCAGCGACGAATTATGGTGCTTGTTTTTTCCCAT
GTTGGTATTGAACTGTTACTGTTTAATTTTTAAATAATTCTATATCTGTT
TCTTTGTTTG
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