CF417464

Overview
NameCF417464
Unique NameCF417464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+QMEGL+WGASKL PVGYGIKKLQI   + DD
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDD 199          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE +RS+QM+GLLWG+SKL PVGYGIKKLQI   + DD
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDD 198          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VR+VQM+GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDD 236          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDMK++E  VR+++MEGLLWGASKL PVGYGI KLQIM  I DD
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDD 193          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            VLLDVKPWDDETDMK++E  VR+++M+GLLWGASKL PVGYGI KLQIM  I DD
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDD 193          

HSP 2 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   40 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHI 216
            +AF +V +  GLK+L+ +L   SYI+GY  SK D++V+ AL KAPS++ VNV+RWY+HI
Sbjct:    1 MAFGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHI 59          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 196          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 196          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 196          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 196          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDD 196          
The following BLAST results are available for this feature:
BLAST of CF417464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_XENTR9.705e-2080.00Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_XENLA6.291e-1976.36Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1D_XENLA8.216e-1976.36Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B2_BOMMO8.216e-1976.36Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_DROME1.830e-1876.36Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B_MOUSE2.391e-1874.55Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN2.391e-1874.55Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK2.391e-1874.55Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_BOVIN2.391e-1874.55Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_RABIT3.122e-1874.55Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-394 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417464 ID=CF417464; Name=CF417464; organism=Citrus sinensis; type=EST; length=690bp
CTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCGCATTCGA
TAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATACCTTCTTA
CTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGATATCACTGTG
TATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATGTGTCTCG
GTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGCGTTACTGGTG
AAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCCCCG
GTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGTGGA
TCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCACGCG
CGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCATCA
GTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAAGCT
TGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAGCCA
GCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATGCTT
ACAATTGTGGATGACTTGGGTGTCTGTTGACACCCTCATTGAGGAACACC
TGCTGGAAGAACCAATTAATGAATATGTCCAGAGCTGTGA
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