CF417464

Overview
NameCF417464
Unique NameCF417464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WGASKL PVGYGI+KLQI   + DD
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDD 251
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDD 252
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDD 252
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDD 252
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDD 252
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   + DD
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDD 251
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            V+LD+KPWDDETDM ++E+ VRSVQM+GL+WGA+KL P+ YGIKKL IM  + DD
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDD 178
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLGV 624
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI +T+++DL V
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKV 235
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 37/58 (63.79%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLGV 624
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI +T+++DL V
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDLKV 185
[Close]
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTI 606
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248
The following BLAST results are available for this feature:
BLAST of CF417464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_RABIT9.084e-1872.73Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT1.549e-1770.91Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE1.549e-1770.91Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA1.549e-1770.91Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN1.549e-1770.91Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN2.643e-1770.91Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B_ARTSA1.713e-1667.27Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]
EF1B2_CAEEL1.713e-1663.79Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL1.713e-1663.79Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1D_SHEEP3.817e-1671.15Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-394 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417464 ID=CF417464; Name=CF417464; organism=Citrus sinensis; type=EST; length=690bp
CTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCGCATTCGA
TAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATACCTTCTTA
CTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGATATCACTGTG
TATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATGTGTCTCG
GTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGCGTTACTGGTG
AAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCCCCG
GTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGTGGA
TCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCACGCG
CGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCATCA
GTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAAGCT
TGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAGCCA
GCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATGCTT
ACAATTGTGGATGACTTGGGTGTCTGTTGACACCCTCATTGAGGAACACC
TGCTGGAAGAACCAATTAATGAATATGTCCAGAGCTGTGA
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