CF417464

Overview
NameCF417464
Unique NameCF417464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLGV 624
            +LLDVKPWDDETDM +LE+ VRS++M+GL+WGASKL  VGYGIKKL I L +V+DL V
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINL-VVEDLKV 189          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            V LDVKPWDDET M +LE+AVRS+QM+GL+WG SKL PVG+G+ K QI L + DD
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDD 185          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +LLD+KPWDDETDM  +E  VRS+ M+GL+WGASKL PV +G+KKLQI   + DD
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDD 208          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            ++LDVKPWDDETD+K +E  +R +  +GLLWGASK  PV +GI+KL I   + DD
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDD 227          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            V LDVKPWDDETD+ +L   V++++MEGL WGA +  PVG+GIKKLQI L + D L
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDAL 185          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDD 177          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDD 615
            +L DVKPWDD  D++ L   + +V+ +GLLWG  KL PV +G+KKLQ ++ I DD
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDD 193          
The following BLAST results are available for this feature:
BLAST of CF417464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_DICDI3.817e-1670.69Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_SCHPO8.502e-1667.27Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_ARTSA1.450e-1563.64Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1D_DROME2.315e-1356.36Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1B_CANAL6.737e-1360.71Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST1.960e-1254.55Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR8.235e-1150.9125 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-394 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417464 ID=CF417464; Name=CF417464; organism=Citrus sinensis; type=EST; length=690bp
CTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCGCATTCGA
TAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATACCTTCTTA
CTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGATATCACTGTG
TATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATGTGTCTCG
GTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGCGTTACTGGTG
AAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCCCCG
GTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGTGGA
TCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCACGCG
CGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCATCA
GTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAAGCT
TGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAGCCA
GCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATGCTT
ACAATTGTGGATGACTTGGGTGTCTGTTGACACCCTCATTGAGGAACACC
TGCTGGAAGAACCAATTAATGAATATGTCCAGAGCTGTGA
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