CF417465

Overview
NameCF417465
Unique NameCF417465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_XENLA (V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.103e-39
Identity = 88/229 (38.43%), Postives = 134/229 (58.52%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    +K++  +   +FNIP+L+VGT            K ++FVE    K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+L+TLL VVPK +  DW+  YETL+  VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGAVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYTDWMKEYETLSEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_XENTR (V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.440e-39
Identity = 88/229 (38.43%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    +K++  +   +FNIP+L+VGT            K ++FVE    K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+L+TLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGTVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYNDWVKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VTC1B_DANRE (V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 86/229 (37.55%), Postives = 136/229 (59.39%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P   +    W+++    ++ +  +   +FNIP L+VGT            K ++FVESV  KI + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + +   V +I++DLK R + YN+++  L ++ RK  GSL  R L+++VK ED ++ SE+L TLL +V K +  +W  +YETL+  VVPRS+ LL+ED E  L++VTLF
Sbjct:    2 TEFWLISAPGDKTCQQTWDKMNMATAESNNLSTNNKFNIPELKVGTLDVLVGLSDELAKLDTFVESVVKKIAQYMTDVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKSISEIMSKQVTQIDNDLKARASAYNSLKGSLQSLERKNVGSLLTRSLADIVKKEDFVLDSEYLTTLLVIVSKTNYPEWQKTYETLSEMVVPRSTKLLFEDQESGLFSVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_DICDI (V-type proton ATPase subunit C OS=Dictyostelium discoideum GN=vatC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 81/225 (36.00%), Postives = 140/225 (62.22%), Query Frame = 3
Query:   18 YWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            +W++S P     A +++++ ++ +K +  +   +FN P LRVGT            K ++ VES + KI RQ+ +L      +  SLS++G  +  YL +F WD+AKY     L+EIV+ I + V+KI+DDLK++ +EY+ + S + +  RK SG+L VR L++L+  ++I+ +++  T   V+PK S K++LA YET++ +V+ RS+  + +DN+Y LY+V LF
Sbjct:    7 FWLISAP-NLPGADIFDQVNQKTAKENSLSENKKFNTPALRVGTLNSLITLNDELQKIDTIVESTTKKIARQLVDLVGTKPGKDKSLSINGHTIPQYLQQFAWDDAKYNLKLSLQEIVEKISSAVSKIDDDLKIKSSEYSTLSSSVASEERKASGNLQVRTLNDLITADNIVQTDYFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVAQDNDYFLYSVILF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_CAEEL (V-type proton ATPase subunit C OS=Caenorhabditis elegans GN=vha-11 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 85/230 (36.96%), Postives = 138/230 (60.00%), Query Frame = 3
Query:    9 ASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            +  YW++S+P +  A   W++L       S ++   ++ IP+L+VGT            K ++  E+V  K+ +   E LE      + +L +    + TY+T+F W+ AKYP    L+ + + I   +++I++DLKV+   YNN+++ L +++RK  GSL  +DL++LVK +D ++ SE+L T++ VVPK S K+W   Y TL+S VVP SS LL E+ E+ALYTVTLF
Sbjct:    6 SGEYWLISVPGEKGANDAWDKLNRSTGNTSTNS---KYLIPDLKVGTLDQLVGLSDDLSKLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSEIIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQKYATLSSMVVPGSSKLLTEEGEHALYTVTLF 232          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_CAEBR (V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 84/230 (36.52%), Postives = 136/230 (59.13%), Query Frame = 3
Query:    9 ASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            +  YW++S+P +  A   W++L       S ++   ++ IP+L+VGT            K ++  E V  K+ +   E LE      + +L +    + TY+T+F W+ AKYP    L+ + + I   + +I++DLK++   YNN+++ L +++RK +GSL  +DL++LVK ED ++ SE+L T++ VVPK   K+W   Y TL+S VVP SS LL E+ E+ALYTVTLF
Sbjct:    7 SGEYWLISVPGEKGANDAWDKLNRATGNISTNS---KYLIPDLKVGTLDQLVGLSDDLSKLDTSAEGVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSEIIGKQITQIDNDLKMKSLAYNNLKNALASMDRKTTGSLLTKDLADLVKAEDFVLNSEYLQTIIVVVPKILVKEWETKYATLSSMVVPGSSKLLTEEGEHALYTVTLF 233          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC2_RAT (V-type proton ATPase subunit C 2 OS=Rattus norvegicus GN=Atp6v1c2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 84/229 (36.68%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S +W++S P          R+    SK +      +F IP+ +VGT            K ++F ES+  ++ + + E +E   G    +L  +GV + +++T F WD AKYP   PL  +VD +   +A+IE DLK R A Y+ +++ L  + +K +G+L  R LS++V  ED ++ SE+L+TLL +VPK S   W  +YE+L+  VVPRS+ L+ EDNE  L+TVTLF
Sbjct:    2 SEFWLISAPGDKENLQALERMNSVTSKSNLSHNT-KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKRMAQSVVEVMEDSKGKVHENLLANGVDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQIETDLKSRTAAYSVLKANLENLEKKSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSYVQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLF 229          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC2_HUMAN (V-type proton ATPase subunit C 2 OS=Homo sapiens GN=ATP6V1C2 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 87/231 (37.66%), Postives = 131/231 (56.71%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKH--SFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S +W++S P          R+    SK   S++T   +F IP+ +VGT            K ++F ES+  ++ + + E +E   G     L  +GV + +++T F WD AKYP   PL  +VD I   +A+IE DLK R A YN +++ L  + +K  G+L  R LS++V  ED ++ SE+LVTLL +VPK +   W  +YE+L+  VVPRS+ L+ ED E  L+TVTLF
Sbjct:    2 SEFWLISAPGDKENLQALERMNTVTSKSNLSYNT---KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVSVVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSEYLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLF 229          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC2_MOUSE (V-type proton ATPase subunit C 2 OS=Mus musculus GN=Atp6v1c2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 83/229 (36.24%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S +W++S P          R+    SK +      +F IP+ +VGT            K ++F ES+  ++ + + E +E   G    +L  +GV + +++T F WD AKYP   PL  +VD +   +A+IE DLK R A Y+ +++ L  + ++ +G+L  R LS++V  ED ++ SE+L+TLL +VPK S   W  +YE+L+  VVPRS+ L+ EDNE  L+TVTLF
Sbjct:    2 SEFWLISAPGDKENLQALERMNNVTSKSNLSHNT-KFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKRMAQSVVEVMEDSKGKAHETLLANGVDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQIETDLKSRTAAYSVLKANLENLEKRSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSFAQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLF 229          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_ASCSS (V-type proton ATPase subunit C 2 OS=Ascidia sydneiensis samea GN=VATC PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.654e-33
Identity = 79/230 (34.35%), Postives = 128/230 (55.65%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFD-TPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIIT-SEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S +WV+S P   +    + RLQ+       + +  Y+F+IP L+VGT            K ++F E V  K+   + E LE      SS+LS     +  ++ RF W+ AKYPT  P++ + + +  +V +++ DL+ +   YNN++S L  + RK +GSL +R+LS +VK +D I  SE+L T++  VP     +W  +YE+L  YV P+SS LL +D EY L+  ++F
Sbjct:    2 SEFWVISAPGDKTPQQTYERLQKATMGSGQNLSNCYKFSIPELKVGTLDSLIGLTDDLGKLDTFCEGVCRKVASYMGEVLEDQKDKLSSNLSAGEGTLVNFMHRFQWNMAKYPTKQPIKSLTEILSKVVTQVDTDLRSKSQAYNNLKSSLQNMERKATGSLLLRNLSQIVKKDDFIDGSEYLRTVIVAVPVALFGEWEKNYESLADYVAPKSSRLLTQDEEYGLFATSIF 231          
The following BLAST results are available for this feature:
BLAST of CF417465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC1_XENLA1.103e-3938.43V-type proton ATPase subunit C 1 OS=Xenopus laevis... [more]
VATC1_XENTR1.440e-3938.43V-type proton ATPase subunit C 1 OS=Xenopus tropic... [more]
VTC1B_DANRE5.473e-3937.55V-type proton ATPase subunit C 1-B OS=Danio rerio ... [more]
VATC_DICDI6.051e-3836.00V-type proton ATPase subunit C OS=Dictyostelium di... [more]
VATC_CAEEL8.738e-3736.96V-type proton ATPase subunit C OS=Caenorhabditis e... [more]
VATC_CAEBR3.320e-3636.52V-type proton ATPase subunit C OS=Caenorhabditis b... [more]
VATC2_RAT9.661e-3636.68V-type proton ATPase subunit C 2 OS=Rattus norvegi... [more]
VATC2_HUMAN9.661e-3637.66V-type proton ATPase subunit C 2 OS=Homo sapiens G... [more]
VATC2_MOUSE1.262e-3536.24V-type proton ATPase subunit C 2 OS=Mus musculus G... [more]
VATC_ASCSS7.654e-3334.35V-type proton ATPase subunit C 2 OS=Ascidia sydnei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-395 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417465 ID=CF417465; Name=CF417465; organism=Citrus sinensis; type=EST; length=693bp
GTGAAATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAGTACAAAATTCA
GCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCTAAACATTCATT
TGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCGTGTTGGAACCC
TAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGTCAAATAGCTTT
GTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAGGAACTGGAGAG
GGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGGAGTACCAGTTG
ATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGTACCCAACTATG
TCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTTGTGGCAAAGAT
TGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAATGTCCGCAGTC
AGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAGCTGTTCGTGAT
CTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCAGAACATCTTGT
AACCCTTCTTGCTGTTGTCCCCAAGTACTCCCANAAGGATTGGTTGGCTA
GCTATGAGACGTTGACTAGCTATGTGGTCCCCAGGTCCTCCNAGCTATTG
TATGAGGATAATGAATATGCCCTTTACACTGTCACACTATTTG
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