CF417465

Overview
NameCF417465
Unique NameCF417465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  306 YLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            YLTRF WD AKYP    LR I D I   + +I+ DLK +   YNN++  L  + +K++GSL  R+L++LVK E  I+ SE+L TLL +VPK    DWL +YE +T  +VPRSS L+ ED +Y L+ VTLF
Sbjct:  550 YLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKITDMIVPRSSQLIQEDADYCLFNVTLF 679          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_YEAST (V-type proton ATPase subunit C OS=Saccharomyces cerevisiae GN=VMA5 PE=1 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 63/192 (32.81%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  120 FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            F IP  ++G+            K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     +++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++ SEHL T+L  VPK    D+  SYETL+  VVP S+ ++ ED EY L+ V LF
Sbjct:   48 FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLF 239          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_SCHPO (V-type proton ATPase subunit C OS=Schizosaccharomyces pombe GN=SPAPB2B4.05 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 63/233 (27.04%), Postives = 119/233 (51.07%), Query Frame = 3
Query:   12 SRYWVVSLPVQN-SAASVWNRLQEQI--SKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSG--IESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S +W++S+P +  S A + + ++  +     S  + +  F++P  +V +            K ++   S   KI   I+     S   ++   +  D  P++ Y++ F W+ +++     + EI D I + +   E+D++ R   +    S    + +KQSG+L+ + L+N+V  ED++  S++L  +   VP    K +L SYETLT  V+PRS+  L +D+E+ LYTV +F
Sbjct:    4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQLTKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLE-YVSSFAWNSSRFHMNKTISEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVVF 235          
The following BLAST results are available for this feature:
BLAST of CF417465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_DROME1.765e-2949.23V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC_YEAST2.637e-2532.81V-type proton ATPase subunit C OS=Saccharomyces ce... [more]
VATC_SCHPO9.705e-2027.04V-type proton ATPase subunit C OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-395 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417465 ID=CF417465; Name=CF417465; organism=Citrus sinensis; type=EST; length=693bp
GTGAAATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAGTACAAAATTCA
GCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCTAAACATTCATT
TGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCGTGTTGGAACCC
TAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGTCAAATAGCTTT
GTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAGGAACTGGAGAG
GGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGGAGTACCAGTTG
ATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGTACCCAACTATG
TCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTTGTGGCAAAGAT
TGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAATGTCCGCAGTC
AGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAGCTGTTCGTGAT
CTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCAGAACATCTTGT
AACCCTTCTTGCTGTTGTCCCCAAGTACTCCCANAAGGATTGGTTGGCTA
GCTATGAGACGTTGACTAGCTATGTGGTCCCCAGGTCCTCCNAGCTATTG
TATGAGGATAATGAATATGCCCTTTACACTGTCACACTATTTG
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