CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_CORGL (Acetolactate synthase large subunit OS=Corynebacterium glutamicum GN=ilvB PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.549e-54
Identity = 112/208 (53.85%), Postives = 141/208 (67.79%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  +TKHN++V + +DIP+ + EAF LA +GRPGPVL+D+PKD+Q       W   I LPGY  R    P    +EQ V+LI E+KKPVLYVGGG + +   EELR F E TGIPV +TLM LG+FP + EL + M GMHGTV A  A+ +SDLL+A G RFDDRVTG ++ FA  AKI+H DID AEIGK KQ  V +  D +  L
Sbjct:  143 ITMPVTKHNFMVTNPNDIPQALAEAFHLAITGRPGPVLVDIPKDVQNAELDFVWPPKIDLPGY--RPVSTPHARQIEQAVKLIGEAKKPVLYVGGGVIKADAHEELRAFAEYTGIPVVTTLMALGTFPESHELHMGMPGMHGTVSAVGALQRSDLLIAIGSRFDDRVTGDVDTFAPDAKIIHADIDPAEIGKIKQVEVPIVGDAREVL 348          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_MYCTU (Acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvB PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.459e-53
Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  ITKHN+LV   DDIPR++ EAF +A SGRPG VL+D+PKD+ Q     +W   ++LPGY      +P    + +  +LI+ ++KPVLYVGGG +   ++E+LR+  ELTGIPV +TLM  G+FP +   +L M GMHGTV A  A+ +SDLL+A G RFDDRVTGKL++FA  AK++H DID AEIGKN+   V +  D+K  +
Sbjct:  155 ITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKPNT--KPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVI 360          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_MYCBO (Acetolactate synthase OS=Mycobacterium bovis GN=ilvB PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.459e-53
Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  ITKHN+LV   DDIPR++ EAF +A SGRPG VL+D+PKD+ Q     +W   ++LPGY      +P    + +  +LI+ ++KPVLYVGGG +   ++E+LR+  ELTGIPV +TLM  G+FP +   +L M GMHGTV A  A+ +SDLL+A G RFDDRVTGKL++FA  AK++H DID AEIGKN+   V +  D+K  +
Sbjct:  155 ITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKPNT--KPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVI 360          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_MYCLE (Acetolactate synthase OS=Mycobacterium leprae GN=ilvB PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.245e-53
Identity = 106/208 (50.96%), Postives = 142/208 (68.27%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  ITKHN+LV   DDIPR++ EAF +A+SGRPG VL+D+PKD+ Q     +W   + LPGY      +P    +    +LI++++KPVLYVGGG +   ++E+LR   ELTGIPV STLM  G+FP +   +L M GMHGTV A  A+ +SDLL+A G RFDDRVTGKL++FA  AK++H DID AEIGKN+   V +  D+K  +
Sbjct:  162 ITMPITKHNFLVRAGDDIPRVLAEAFHIASSGRPGAVLVDIPKDVLQGQCKFSWPPKMDLPGYKPNT--KPHNRQIRAAAKLIADARKPVLYVGGGVIRGEATEQLRDLAELTGIPVVSTLMARGAFPDSHHQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKAVI 367          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_BACSU (Acetolactate synthase large subunit OS=Bacillus subtilis GN=ilvB PE=1 SV=4)

HSP 1 Score: 196.823 bits (499), Expect = 7.493e-50
Identity = 101/209 (48.33%), Postives = 138/209 (66.03%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            +T  +TKH+Y V   +D+PRI++EAF +AT+GRPGPVLID+PKD+       +++  + LPGY      EP+ + + ++V  +S +KKPV+  G G L+  +SEEL+ + E   IPVA TL+GLG FP    L L M GMHGT  AN A+ + DLL++ G RFDDRVTG L+ FA  AKI HIDID AEIGK  +  + V  D K+ L+
Sbjct:  134 ITMPVTKHSYQVRQPEDLPRIIKEAFHIATTGRPGPVLIDIPKDVATIEGEFSYDHEMNLPGYQPTT--EPNYLQIRKLVEAVSSAKKPVILAGAGVLHGKASEELKNYAEQQQIPVAHTLLGLGGFPADHPLFLGMAGMHGTYTANMALHECDLLISIGARFDDRVTGNLKHFARNAKIAHIDIDPAEIGKIMKTQIPVVGDSKIVLQ 340          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_SYNPX (Acetolactate synthase large subunit OS=Synechococcus sp. (strain WH8102) GN=ilvB PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.846e-48
Identity = 102/209 (48.80%), Postives = 142/209 (67.94%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-QQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  I KH+++V D  D+  IV +AFL+A SGRPGPVLID+PKD+ Q+Q           +PG   + P+ P +  +   + LI ++++P+LYVGGG +++   + LR   E   +PV +TLMG G+F   D LS+ MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA RA++VH +ID AEIGKN++  V+V  DL L+L
Sbjct:  141 ITLPIVKHSWVVRDPADLGSIVAQAFLIAASGRPGPVLIDIPKDVGQEQFNYVPVEPGSVIPGGFHQ-PEPPLDAAVAAALDLIEQAQRPLLYVGGGAISACAHDSLRMLAERYQLPVTTTLMGKGAFDENDALSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDTFAPRARVVHFEIDPAEIGKNRKADVAVLGDLGLSL 348          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_GUITH (Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.370e-48
Identity = 100/210 (47.62%), Postives = 137/210 (65.24%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI-----QQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLK 609
            +T  I KH+Y+V +  ++ +IV E+F +A  GRPGPVLID+PKD+       Q+  PN    I L G    + K   +  + Q   LI +S +P+LY+GGG +  NS  E+ + + L  IPVA+TLMG G    +  LSL MLGMHGTVYANYAV + DLL+A G RFDDRVTGKL+ FA  A+++H+DID AEIGKN+ P + +  ++K
Sbjct:  130 ITLPIVKHSYVVRETKEMGKIVAESFFIAKYGRPGPVLIDIPKDVGLEKFDYQIVNPN---NINLAG--CPVLKNYDQNRISQAANLIKQSSQPLLYIGGGAVTSNSHNEINELINLVKIPVATTLMGKGIIDESHPLSLGMLGMHGTVYANYAVSECDLLIALGARFDDRVTGKLDEFACHAQVIHVDIDPAEIGKNRTPQIGIVGEIK 334          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.196e-47
Identity = 100/208 (48.08%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLN--SSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  ITKHN+LV+   + P ++ EAF +A SGRP    +D+PKD+ Q     +W   I LPGY  +   +P    + +  +LI+ ++KPVLYVGGG +   +SE+LR+  ELTGIPV +TLM  G+FP +    L M GMHGTV A  A+ +SDLL+A G RFDDRVTGKL+ FA  AK++H DID AEIGKN+   V +  D+K  +
Sbjct:  159 ITMPITKHNFLVVRQRN-PAVLAEAFHIAASGRPARCSVDIPKDVLQGQCTFSWPPRIHLPGY--KPTTKPHSRQIRERAKLIAAARKPVLYVGGGVIRGEASEQLRELAELTGIPVVTTLMARGAFPDSHRQHLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDTFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVI 363          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.564e-46
Identity = 100/210 (47.62%), Postives = 136/210 (64.76%), Query Frame = 1
Query:   13 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ-QLAVPNWNQPIK--LPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            ITKHN+ +   ++IP   R AF +AT+GRPGPV ID+PKD+Q  ++ +  +  P K  LPGY  +    P +I  ++  +LI+ES++PV+  GGG + S  SEEL +  E   IPV +TLMG G FP    L+L M+GMHGT  ANYAV + D+L+A G RF DRVTG +  FA  AKI+HIDID AEIGKN +  + +  D K  L+ +
Sbjct:  121 ITKHNFQIKKPEEIPETFRAAFEIATTGRPGPVHIDLPKDVQDGEIDIEKYPIPAKVDLPGYKPKTVGHPLQI--KKAAKLIAESERPVILAGGGVIISGASEELLRLAEFVKIPVCTTLMGKGCFPEDHPLALGMVGMHGTKAANYAVTECDVLIAIGCRFSDRVTGDIRYFAPEAKIIHIDIDPAEIGKNVRADIPIVGDAKNVLRDL 328          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.564e-46
Identity = 103/214 (48.13%), Postives = 140/214 (65.42%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIK--LPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSS-----EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            +T  I KH+++V D  DI  IV EAF ++  GRPG VLIDVPKD+  +    +    I+   P    R    PS   +E+  +++ ESK+P+LYVGGG + S      EEL  F++   IPV +TLMG GSF   + L L MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA  A+++H+DID AEIGKN+ P +++ +D+K+ LK
Sbjct:  130 ITLPIVKHSFVVRDPRDISTIVSEAFYISKHGRPGAVLIDVPKDVGLEEFNYHDYDSIRDHKPITKYRPIYGPSIRQIEKFKKMLLESKQPILYVGGGAVMSRAQHEIEELASFIK---IPVTTTLMGKGSFNEYNPLYLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHVDIDPAEIGKNRIPQLAIISDIKIVLK 340          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ILVB_CORGL6.549e-5453.85Acetolactate synthase large subunit OS=Corynebacte... [more]
ILVB_MYCTU1.459e-5350.48Acetolactate synthase OS=Mycobacterium tuberculosi... [more]
ILVB_MYCBO1.459e-5350.48Acetolactate synthase OS=Mycobacterium bovis GN=il... [more]
ILVB_MYCLE4.245e-5350.96Acetolactate synthase OS=Mycobacterium leprae GN=i... [more]
ILVB_BACSU7.493e-5048.33Acetolactate synthase large subunit OS=Bacillus su... [more]
ILVB_SYNPX1.846e-4848.80Acetolactate synthase large subunit OS=Synechococc... [more]
ILVB_GUITH5.370e-4847.62Acetolactate synthase large subunit OS=Guillardia ... [more]
ILVB_MYCAV1.196e-4748.08Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVB_METJA6.564e-4647.62Probable acetolactate synthase large subunit OS=Me... [more]
ILVB_CYACA6.564e-4648.13Acetolactate synthase large subunit OS=Cyanidium c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
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