CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.258e-45
Identity = 98/209 (46.89%), Postives = 136/209 (65.07%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP--IKLPGYMSRLPKEPSEIHLEQIV---RLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 606
            +T  I KH+Y+V D  D+ RIV EAF +   GRPGPVLIDVPKD+  +       +P  +K+PG      +  S +   QI+   ++I +S +P+LY+GGG + S     +++ V+L  IPV +TLMG G F    E  L MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA  A+++H+DID AE+GKN+ P V++  D+
Sbjct:  131 ITLPIVKHSYVVRDPRDMSRIVAEAFYICKHGRPGPVLIDVPKDVGLEKFNYFSVEPGQVKIPGC-----RPLSNLKSRQILMAAKMIQQSSQPLLYIGGGAIISDAHSIIKELVDLYKIPVTTTLMGKGIFNEDSEFCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHVDIDPAEVGKNRIPQVAIVGDV 334          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.258e-45
Identity = 98/209 (46.89%), Postives = 136/209 (65.07%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP--IKLPGYMSRLPKEPSEIHLEQIV---RLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 606
            +T  I KH+Y+V D  D+ RIV EAF +   GRPGPVLIDVPKD+  +       +P  +K+PG      +  S +   QI+   ++I +S +P+LY+GGG + S     +++ V+L  IPV +TLMG G F    E  L MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA  A+++H+DID AE+GKN+ P V++  D+
Sbjct:  131 ITLPIVKHSYVVRDPRDMSRIVAEAFYICKHGRPGPVLIDVPKDVGLEKFNYFSVEPGQVKIPGC-----RPLSNLKSRQILMAAKMIQQSSQPLLYIGGGAIISDAHSIIKELVDLYKIPVTTTLMGKGIFNEDSEFCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHVDIDPAEVGKNRIPQVAIVGDV 334          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.257e-45
Identity = 91/200 (45.50%), Postives = 126/200 (63.00%), Query Frame = 1
Query:   13 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEP--SEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 606
            ITKHNYLV  ++++P+++ +AF +A SGRPGPV ID+PKD+Q  +        I+    M+     P  SE  +     +I+ +K+PVLY+GGG +N+   +R+  E   +P   TLM LG  P    LSL MLGMHG    NY + ++DLL+  G RFDDR  GK E F   AKI+H+DID AE+GK KQPHV++ AD+
Sbjct:  134 ITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVF------EIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADV 327          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_SPIPL (Acetolactate synthase (Fragment) OS=Spirulina platensis GN=ilvY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 103/213 (48.36%), Postives = 135/213 (63.38%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI--QQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQ---MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  I KH+YLV +  ++PRIV EAF LA SGRPGPVLID+PKD+   Q   +P     ++  GY       P +I+  Q ++LISE+ KP+LYVGGG +   +  E+ +  E   IPV STLMG G F     LSL    MLGMHGT YAN+AV + D ++A GVRFDDRV G  + FA  AK++HIDID AE+GKN+   V +  D++  L
Sbjct:  131 ITLPIVKHSYLVREPSELPRIVVEAFHLAMSGRPGPVLIDIPKDVGNAQIDYIPVEPGSVRRVGYRPTERGNPRQIN--QALQLISEATKPLLYVGGGAIMAGAHAEIAELSERFQIPVTSTLMGKGRFDENHPLSLGIVGMLGMHGTAYANFAVMELDFVIAVGVRFDDRVAGTGDQFAHSAKVIHIDIDPAEVGKNRSTDVPIVGDVRQVL 341          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.758e-44
Identity = 95/208 (45.67%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEP-SEIHLEQIV---RLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADL 606
            +T  I KH+Y+V D  D+ RIV EAF +   GRPGPVLIDVPKD+     +  +N     PG ++     P + +   QI+   ++I +S +P+LY+GGG +  +S + +++ V+   IPV +TLMG G F    +  L MLGMHGT YAN+AV + DLL+A G RFDDRVTGKL+ FA  A+++H+DID AE+GKN+ P V++  D+
Sbjct:  131 ITLPIVKHSYVVRDPRDMSRIVAEAFFICKHGRPGPVLIDVPKDV----GLEKFNYFSVEPGKVNIPGCRPITSLKSRQILMAAKMIQQSSQPLLYIGGGAIISDSHQIIKELVDFYKIPVTTTLMGKGIFNEDSDYCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHVDIDPAEVGKNRIPQVAIVGDV 334          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_METAO (Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 1
Query:   13 ITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQ-QLAVPNWNQP--IKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            I KHN+ +     IP I R AF +A +GRPGPV ID+PKD+Q+ +L +     P  +KL GY       P +I  ++ ++LI+ +K+P++  GGG L S  +EEL K VEL  IPV +TLMG G       L+L M+GMHGT  ANY + +SD+L++ G RF DR+TG +++FA+ AKI+HIDID AEIGKN    V +  D KL LK +
Sbjct:  121 IVKHNFQIQKTCQIPEIFRSAFEIAQTGRPGPVHIDLPKDVQELELDIDKHPIPSKVKLIGYNPTTIGHPRQI--KKAIKLIASAKRPIILAGGGVLLSGANEELLKLVELLNIPVCTTLMGKGCISENHPLALGMVGMHGTKPANYCLSESDVLISIGCRFSDRITGDIKSFATNAKIIHIDIDPAEIGKNVNVDVPIVGDAKLILKEV 328          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43
Identity = 93/211 (44.08%), Postives = 132/211 (62.56%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN--WNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++R I KH++LV   +DIP I ++AF LA++GRPGPV+ID+PKDI ++    N  W + I +  Y         +I  ++ +R++ ++KKP++Y GGG +  NSSEELR F E    PV ++LMGLG+FPG    S+ MLGMHGT  AN A+  SD++ A GVRFDDR T  L+ +   A I+H+DID   I K     + +  D K  LK
Sbjct:  121 ISRPIVKHSFLVKRTEDIPIIFKKAFWLASTGRPGPVVIDLPKDILKKTNKYNFIWPKNIHIRSYNPTTKGHQGQI--KKALRILLKAKKPIIYAGGGIISSNSSEELRIFAEKINCPVTTSLMGLGAFPGNHIQSISMLGMHGTYEANMAMHYSDVIFAIGVRFDDRTTNNLKKYCPNATILHVDIDPTSISKTVSADIPIVGDAKQVLK 329          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_HAEIN (Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 86/213 (40.38%), Postives = 137/213 (64.32%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPS----EIHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++R + KH+++V   +DIP  +++AF +A++GRPGPV++D+PKD       PN+  P + P Y+      P+    +  +++ ++ +  +KKP+L+VGGG + +  SE+L +F +   +PV S+LMGLG++P TD+  L MLGMHGT+ AN A+ +SDL+L  GVRFDDR T  LE +   AK++HIDID   I KN    + +  + K  L+
Sbjct:  121 ISRPVVKHSFIVKKAEDIPSTLKKAFYIASTGRPGPVVVDIPKDTVN----PNFKYPYEYPEYVELRSYNPTVNGHKGQIKKALKALLVAKKPILFVGGGAITAECSEQLIQFAQRLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTLEANTAMHESDLILGIGVRFDDRTTNNLEKYCPNAKVIHIDIDPTSISKNVPVAIPIVGNAKNVLE 329          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_BUCBP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvI PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.727e-41
Identity = 86/213 (40.38%), Postives = 132/213 (61.97%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPN--WNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            ++R I KH++LV + +DIP+I ++AF LA+SGRPGP++ID+PKDI   L      W + I +  Y   L     +I  ++ + ++ ++K+P++Y+GGG +  NS +EL+   E   IPV ++LM LG+ P     +L+MLGMHGT  AN A+  +D++LA GVRFDDR T  ++ +   A I+HIDID   I K    H+ +    +  LK I
Sbjct:  121 ISRPIVKHSFLVKNTEDIPKIFKKAFWLASSGRPGPIVIDLPKDILNPLIKKPYIWPKLISIRSYSPVLQGHQGQI--KKALHILIKAKQPIIYIGGGIITSNSHKELKLLAETLNIPVTTSLMALGALPQNHPQNLKMLGMHGTYEANMAIHNADVILAIGVRFDDRTTNNVDKYCPNATIIHIDIDPTSISKTISAHIPIVGHARNVLKQI 331          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 86/211 (40.76%), Postives = 129/211 (61.14%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDI--QQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++R I KH++LV   +DIP + ++AF LA+SGRPGP++ID+PKDI  +    +  W   I +  Y         +I  ++ +  + ++++PV+Y GGG +  NSSEELR F E    PV ++LMGLGSFPGT + ++ MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++H+DID   I K    ++ +  D K  L+
Sbjct:  121 ISRPIVKHSFLVKKTEDIPIVFKKAFWLASSGRPGPIVIDLPKDILKKDNKYLYKWPDNINIRSYNPTTKGHIGQI--KKALHTLLKAQRPVIYAGGGIISSNSSEELRIFAEKINCPVTTSLMGLGSFPGTHDQNISMLGMHGTYEANMTMHHADVIFAIGVRFDDRTTNNLNKYCPNAIVLHVDIDPTSISKTVSANIPIVGDAKHVLQ 329          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ILVB_PORUM3.258e-4546.89Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU3.258e-4546.89Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB_ECOLI7.257e-4545.50Acetolactate synthase isozyme 1 large subunit OS=E... [more]
ILVB_SPIPL2.112e-4448.36Acetolactate synthase (Fragment) OS=Spirulina plat... [more]
ILVB_PORYE2.758e-4445.67Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_METAO4.704e-4446.67Probable acetolactate synthase large subunit OS=Me... [more]
ILVI_BUCAP2.335e-4344.08Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_HAEIN3.049e-4340.38Acetolactate synthase large subunit OS=Haemophilus... [more]
ILVI_BUCBP3.727e-4140.38Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_BUCAI4.868e-4140.76Acetolactate synthase large subunit OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
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