CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 92/208 (44.23%), Postives = 131/208 (62.98%), Query Frame = 1
Query:   16 TKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIH--LEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            TKH++LV  ++++PRI+ EAF +A SGRPGPVL+D+PKDIQ             L  + + +  E +  H  +EQ  +++++++KP+LYVGGG     +   LR+F+  T +P   TL GLG+        L MLGMHGT  AN+AV + DLL+A G RFDDRVTGKL  FA  A ++H+DID AE+ K +Q HV++  DL   L  +
Sbjct:  122 TKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASG--------DLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPAL 321          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_SALTY (Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium GN=ilvI PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEI----HLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++R + KH++LV   +DIP ++++AF LA SGRPGPV++D+PKDI      P    P   P  +S     P+       +++ ++ ++ +KKPV+YVGGG ++++    LR  +E   +PV S+LMGLG+FP T   SL MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++HIDID   I K     + V  D +L L+
Sbjct:  121 ISRPVVKHSFLVKQTEDIPLVLKKAFWLAASGRPGPVVVDLPKDILN----PAKKMPYAWPETVSMRSYNPTTSGHKGQIKRALQTLASAKKPVVYVGGGAISAACYAPLRHIIETFNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVNADIPVVGDARLVLE 329          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 94/209 (44.98%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQP-IKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +T  ITK+NY + +  DIPRIV EA+ LA +GRPGPV ID+PKD+   L V   N P + LP Y     ++ ++  L++++  +S SKKPV+  GGG     S +  R FVE   IPV STL+GLG+ P + EL L M GMHG+  AN A+ ++D ++  G RFDDRV       A  A + HIDID+AE+GK  +  + + +DLK AL
Sbjct:  127 ITAPITKYNYQIRETADIPRIVTEAYYLARTGRPGPVEIDLPKDVST-LEVTEINDPSLNLPHYHES--EKATDEQLQELLTELSVSKKPVIIAGGGINYSGSVDIFRAFVEKYQIPVVSTLLGLGTLPISHELQLGMAGMHGSYAANMALVEADYIINLGSRFDDRVVSNPAKVAKNAVVAHIDIDAAELGKIVKTDIPILSDLKAAL 332          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 85/211 (40.28%), Postives = 127/211 (60.19%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            ++R I KH++LV   +DIP   ++AF LA+SGRPGP++ID+PKDI        +  PI++         +     +++ + ++  SK+PV+Y GGG +  N   EL++  E   IPV ++LM LG+FPG    +LQMLGMHGT  AN A+  +D++LA GVRFDDR T  ++ +   A I+HIDID   I K    H+ +  + K  L+ I
Sbjct:  121 ISRPIVKHSFLVKKTEDIPITFKKAFWLASSGRPGPIVIDLPKDILNSYNKKPYIWPIEVNIRSYNPITKGHSRQIKKAIDILKLSKQPVIYAGGGVISANCHNELKELAEKLNIPVTTSLMALGAFPGNHPQNLQMLGMHGTYEANMAMHYADVILAIGVRFDDRTTNNVKKYCPNATIIHIDIDPTSISKTITAHIPIVGNAKNVLQQI 331          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.045e-39
Identity = 94/229 (41.05%), Postives = 137/229 (59.83%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEI----------HLEQIVRLISESKKPVLYVGGGCLNSSE---ELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++RS TK N +V DV D+PR + EAF +ATSGRPGPVL+D+PKD+   +      +PI +   +  + +   E+           ++++  L+  +KKPV++ G G L + E    LRKF E   IPV ++L+GLG+     +LSL MLGMHG+ YAN A+ ++DL+LA GVRFDDRVTG +  FA +A+         I+H DI    IGK  QP  ++  D+  +LK
Sbjct:  204 ISRSCTKWNVMVKDVADLPRRIDEAFEIATSGRPGPVLVDLPKDVTASVL----KEPIPILSSVPSMNRRMKEVLEEGSKNVTAKIDRVANLLKLAKKPVIFCGHGVLANPECPTLLRKFSERLQIPVTTSLLGLGAVDERSDLSLHMLGMHGSGYANMAMQEADLILALGVRFDDRVTGNVSLFAPQARLAAAEERGGIIHFDISPKNIGKVVQPTEAIEGDVYESLK 428          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.556e-39
Identity = 88/231 (38.10%), Postives = 134/231 (58.01%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIH-------------LEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG---IPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            ++RS TK N +V D+ ++PR + EAF +AT+GRPGPVL+D+PKD+   +           PG+   LP  P                 + +  ++I+++K+P+++ G G L+S E  +   EL+    IPV +TL GLG+F   DE SL M+GMHG+ YAN+A+ ++D+L+A GVRFDDRVTGK++ FA  AK         I+H +I    I K  +  + V  D+  +L
Sbjct:  243 ISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDVTAAILRTPIPAKSAQPGHSPYLPSNPLNPSSQPSDPLPGDADLITEAAQMINKAKRPIIFAGNGVLSSPEGPKLLKELSDKGRIPVTTTLQGLGAFDERDEKSLHMIGMHGSAYANFAMQEADVLIALGVRFDDRVTGKVDTFAPAAKAAAAEGRGGIIHFEIQPKNINKIVEAQIPVLGDVVASL 473          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.951e-39
Identity = 88/231 (38.10%), Postives = 134/231 (58.01%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIH-------------LEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG---IPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            ++RS TK N +V D+ ++PR + EAF +AT+GRPGPVL+D+PKD+   +           PG+   LP  P                 + +  ++I+++K+P+++ G G L+S E  +   EL+    IPV +TL GLG+F   DE SL M+GMHG+ YAN+A+ ++D+L+A GVRFDDRVTGK++ FA  AK         I+H +I    I K  +  + V  D+  +L
Sbjct:  243 ISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDVTAAILRTPIPAKSVQPGHSPYLPSNPLNPSSQPSDPLPGDADLITEAAQMINKAKRPIIFAGNGVLSSPEGPKLLKELSDKGRIPVTTTLQGLGAFDERDEKSLHMIGMHGSAYANFAMQEADVLIALGVRFDDRVTGKVDTFAPAAKAAAAEGRGGIIHFEIQPKNINKIVEAQIPVLGDVVASL 473          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.015e-38
Identity = 81/211 (38.39%), Postives = 128/211 (60.66%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQL-AVPN-WNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALK 621
            ++R + KH++LV   +DIP+++++AF LA SGRPGPV++D+PKDI      +P  W + + +  Y         +I  ++ ++ +  +KKPV+YVGGG + +   ++L++ VE   +PV  +LMGLG+FP T   +L MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++HIDID   I K     + +  D +  L+
Sbjct:  121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQI--KRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLE 329          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.050e-35
Identity = 91/218 (41.74%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPG-----YMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEELRKFVELTG---IPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCAD 603
            ++RS TK N +V  V+++P  + EAF +ATSGRPGPVL+D+PKD+   +          LP        SR   E     + +   LI+ +KKPVLYVG G LN ++  R   EL+    IPV +TL GLGSF   D  SL MLGMHG   AN AV  +DL++A G RFDDRVTG +  FA  A+         I+H ++    I K  Q  ++V  D
Sbjct:  209 ISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGD 426          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: GCL_ECOLI (Glyoxylate carboligase OS=Escherichia coli (strain K12) GN=gcl PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28
Identity = 75/211 (35.55%), Postives = 119/211 (56.40%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV--PNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV-YANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            + + ++K    V +   +PR++++AF L  SGRPGPVL+D+P D+Q       P+  +P  LP Y        S + +E+ V ++ ++++PV+  GGG +N+     L++F ELT +PV  TLMG G  P   EL   M+G+     Y N  +  SD++   G RF +R TG +E +    KIVHIDI+  +IG+   P + + +D K AL
Sbjct:  122 IAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEP--LPVYKPAA----SRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAAL 326          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ILVG_ECOLI4.868e-4144.23Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVI_SALTY1.850e-4040.38Acetolactate synthase isozyme 3 large subunit OS=S... [more]
ILVB_LACLA9.181e-4044.98Acetolactate synthase large subunit OS=Lactococcus... [more]
ILVI_BUCSC1.199e-3940.28Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SCHPO2.045e-3941.05Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_CRYNE4.556e-3938.10Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_CRYNV5.951e-3938.10Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVI_ECOLI1.015e-3838.39Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVB_YEAST1.050e-3541.74Acetolactate synthase catalytic subunit, mitochond... [more]
GCL_ECOLI1.244e-2835.55Glyoxylate carboligase OS=Escherichia coli (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
back to top