CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: GCL_ECO57 (Glyoxylate carboligase OS=Escherichia coli O157:H7 GN=gcl PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28
Identity = 75/211 (35.55%), Postives = 119/211 (56.40%), Query Frame = 1
Query:    1 VTRSITKHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAV--PNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSSEE--LRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTV-YANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            + + ++K    V +   +PR++++AF L  SGRPGPVL+D+P D+Q       P+  +P  LP Y        S + +E+ V ++ ++++PV+  GGG +N+     L++F ELT +PV  TLMG G  P   EL   M+G+     Y N  +  SD++   G RF +R TG +E +    KIVHIDI+  +IG+   P + + +D K AL
Sbjct:  122 IAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEP--LPVYKPAA----SRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAAL 326          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: HACL1_DICDI (Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyostelium discoideum GN=hacl1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 58/209 (27.75%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   19 KHNYLVLDVDDIPRIVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKE--PSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKQPHV----SVCADLKLAL 618
            K  Y + ++D  P I+++A   + S RPGPV I +P D+ +     + N   +  GY +   K   P    ++  V+L+SE+K+P++  G G     S  EL +F+E T IP   + MG G       L +           +YA+  +D++L  G R +     GK   F++  K + +D+D  +  K K P+V    ++  D +L++
Sbjct:  123 KKCYYLTEIDHFPEILKDAIETSLSNRPGPVYIQIPADLIKSKCKESPNIR-EAAGYGTIAIKSVVPDMKLIKDAVQLLSEAKRPLVIGGKGAAYCRSENELLEFIEATKIPFLPSPMGKGLLRDDHPLVV-------GAARSYALKNADVVLVLGARLNWMFNFGKAPTFSTDVKFIIVDVDENQASKTKNPNVVPEIAIVGDARLSI 323          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_GEOTN (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 59/189 (31.22%), Postives = 94/189 (49.74%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPK----EPSEIHLEQIVRLISESKKPVLYVGGGCLNS--SEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGI 627
            +L      G V I +P+D+Q +     W+ P     +  R+ +    +PS   +   V+LI   KKP+L +GGG   S  ++   KF E   IP A T  G G+   +  L+L  +G+ G + AN    ++DL++  G RF D  T   + F+S A+I+ I++  +E   +K   V V AD K  L+ I
Sbjct:  172 VLTNPADTGAVTIALPQDVQGEA----WDFPESF--FAKRVHRIERRQPSLESVRDAVKLIRSKKKPLLVLGGGVRYSEAADAFVKFAEKFNIPFAETQAGKGTIESSHPLNLGGIGVTGNLAANTIAKQADLIIGVGTRFTDFTTASKQLFSS-AEILTINV--SEFHASKLDAVKVVADAKAGLEAI 351          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACHK (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=iolD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G V AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNVAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACC0 (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus cereus (strain AH820) GN=iolD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G V AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNVAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACAN (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus anthracis GN=iolD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G V AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNVAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACAC (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=iolD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G V AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNVAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACAA (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus anthracis (strain A0248) GN=iolD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G V AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNVAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD1_BACCZ (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase 1 OS=Bacillus cereus (strain ZK / E33L) GN=iolD1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G + AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPSYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNIAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFVNINISEFHANKLDALKVIADAKEAL 350          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACC3 (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus cereus (strain 03BB102) GN=iolD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   79 LLATSGRPGPVLIDVPKDIQQQL-AVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGC--LNSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            +L      G V I +P+D+Q +    P++    ++     RLP + S   L   V +I   KKPV+  GGG     ++EEL++F E   IP   T  G  +   +   +L  +G+ G + AN    ++DL++  G RF D  T   + F +  ++  ++I+ +E   NK   + V AD K AL
Sbjct:  172 VLTNPADTGAVTICLPQDVQGEAWDFPDYFFQKRVHRIERRLPTKAS---LADAVEMIKRKKKPVMICGGGVRYAEAAEELKQFAETFHIPFGETQAGKSAIESSHPYNLGGIGVTGNIAANTIAKEADLVIGIGTRFTDFTTASKQLFQNE-EVEFLNINISEFHANKLDALKVIADAKEAL 350          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GCL_ECO571.244e-2835.55Glyoxylate carboligase OS=Escherichia coli O157:H7... [more]
HACL1_DICDI3.884e-1427.75Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyosteliu... [more]
IOLD_GEOTN1.130e-1331.223D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACHK2.518e-1330.053D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACC02.518e-1330.053D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACAN2.518e-1330.053D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACAC2.518e-1330.053D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACAA2.518e-1330.053D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD1_BACCZ2.518e-1329.513D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
IOLD_BACC33.288e-1329.513D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
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