CF417470

Overview
NameCF417470
Unique NameCF417470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: IOLD_BACSK (3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus clausii (strain KSM-K16) GN=iolD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 54/188 (28.72%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   61 IVREAFLLATSGRPGPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCLNSS--EELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLAL 618
            ++R   ++   G+ GP  I + +D++ +          K   Y+ R  ++P+E  +E+ +  I  SK+P+L VGGG   S   EEL    E  GIP+  T  G  +       +L  LG+ GT+ AN A  ++DL++  G R+ D  T    AF        ++I+ + +   K     V AD K  L
Sbjct:  167 LIRAFEVMTDPGKAGPATICIAQDVEGEAYEYPEEFFRKRIHYLER--RKPTEREIEEALERIRRSKRPLLVVGGGAKYSEAKEELVALSEQCGIPLVETQAGKATVAADFANNLGGLGVTGTLAANKAAREADLVIGVGTRYTDFATSSKTAF-DFEHTTFLNINVSRMQTYKLDAYQVVADAKETL 351          
BLAST of CF417470 vs. ExPASy Swiss-Prot
Match: XSC_ALCDF (Sulfoacetaldehyde acetyltransferase OS=Alcaligenes defragrans GN=xsc PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 52/174 (29.89%), Postives = 82/174 (47.13%), Query Frame = 1
Query:  103 GPVLIDVPKDIQQQLAVPNWNQPIKLPGYMSRLPKEPSEIHLEQIVRLISESKKPVLYVGGGCL--NSSEELRKFVELTGIPVASTLMGLGSFPGTDELSLQMLGMHGTVYANYAVDKSDLLLAFGVR---FDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLK 609
            GP  +++P+D             I LP  + R P       L+   RL++E+K PV+  GGG +  ++ EE +   E  G PV ++ +   SFP +  L    LG  G+  A   +  +D++LA G R   F       L+ +   A+I+ +D DS  +G  K+  V VC D K
Sbjct:  164 GPAQLNIPRDY----FYGKIKCEIPLPQPLDRGPGGAQS--LDAAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWCGPLGYQGSKAAMKLLADADVVLALGTRLGPFGTLPQHGLDYWPKNARIIQVDADSKMLGLVKKITVGVCGDAK 331          
The following BLAST results are available for this feature:
BLAST of CF417470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IOLD_BACSK3.078e-1128.723D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrola... [more]
XSC_ALCDF8.954e-1129.89Sulfoacetaldehyde acetyltransferase OS=Alcaligenes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-400 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417470 ID=CF417470; Name=CF417470; organism=Citrus sinensis; type=EST; length=629bp
GTAACGCGCTCCATTACAAAACATAATTATCTTGTACTTGATGTTGACGA
CATTCCTAGGATTGTTAGAGAAGCTTTCCTTTTAGCAACATCTGGGCGGC
CAGGCCCTGTGTTGATCGATGTACCGAAAGACATACAGCAGCAGCTGGCG
GTTCCCAATTGGAACCAGCCGATTAAATTGCCCGGTTACATGTCTAGGTT
GCCTAAAGAACCCAGTGAGATTCATTTGGAACAGATTGTTAGGTTAATAT
CAGAATCAAAGAAACCGGTGTTGTATGTTGGTGGCGGGTGTTTGAATTCT
AGTGAGGAGTTAAGGAAGTTTGTTGAGCTTACGGGGATACCGGTAGCAAG
TACTTTGATGGGTTTGGGGTCGTTTCCTGGTACGGATGAGTTATCGTTGC
AAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGATAAG
AGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGACTGG
GAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATATTG
ATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGTGCA
GATTTGAAGTTGGCTTTGAAGGGAATTAT
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