CF417475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36 Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 43 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 MK+N VSS R KNRK HF APS +RR +MS+P+S +LRQKYN RSMP+RKDDEVQVVRG +KG++ GKVVQVYR+K+V+HIERI REK NG+TV VGI+PSKV+I Sbjct: 1 MKFNKMVSSDRGKNRKRHFNAPSHMRRKIMSSPMSKELRQKYNCRSMPIRKDDEVQVVRGHFKGQQVGKVVQVYRKKFVVHIERIQREKANGATVYVGIHPSKVLI 106
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26_SCHPO (60S ribosomal protein L26 OS=Schizosaccharomyces pombe GN=rpl26 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.801e-34 Identity = 68/106 (64.15%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 43 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 MK++ V+SSRRK RKAHF APSSVRR+LMSAPLS +LR++Y +RS+PVR+DD++ V+RG+ KGREGK+ VYR+K+++ IER+TREK NG++ VGI+ SKVVIT Sbjct: 1 MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVIT 106
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = 1 Query: 94 HFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT Sbjct: 1 HFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26_DICDI (60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32 Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1 Query: 43 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 MK N VSSSRRK+RKAHFTA S RRI MSA LS DLR KYNVRS+P+RKDDEV+VV G K EGKVV YR+K+VIHI+++T K NG+T +G++PS V++T Sbjct: 1 MKRNTNVSSSRRKSRKAHFTASSGERRIRMSAALSHDLRTKYNVRSLPIRKDDEVRVVCGDNKNHEGKVVACYRKKYVIHIDKLTVTKTNGNTAQIGVSPSNVILT 106
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26_CAEEL (60S ribosomal protein L26 OS=Caenorhabditis elegans GN=rpl-26 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 1 Query: 43 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 MK NP VSS K+RKAHF APS RR +MSAPL+ +LR K+ +R++P+R DDEV V+RG +KG G+V++ YR+K+VIHI++ITREK NGSTV++GI+PSKV IT Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAIT 106
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26B_YEAST (60S ribosomal protein L26-B OS=Saccharomyces cerevisiae GN=RPL26B PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29 Identity = 58/100 (58.00%), Postives = 85/100 (85.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+ VYR K+ + ++++T+EKVNG++V + ++PSK+VIT Sbjct: 8 VSSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL26A_YEAST (60S ribosomal protein L26-A OS=Saccharomyces cerevisiae GN=RPL26A PE=1 SV=3) HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29 Identity = 58/100 (58.00%), Postives = 85/100 (85.00%), Query Frame = 1 Query: 61 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 360 VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+ VYR K+ + ++++T+EKVNG++V + ++PSK+VIT Sbjct: 8 VSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRHO (50S ribosomal protein L24P OS=Pyrococcus horikoshii GN=rpl24p PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20 Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 1 Query: 43 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 MK N S RK RK + AP VR+ +MSAPLS +LR+KY VR++PVR D+V+++RG +KG EGKVV+V +++ I++E +T KVNG+ V I+PS V+I Sbjct: 1 MKMN---SKQPRKQRKFLYNAPLHVRQKMMSAPLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGTEVFYPIHPSNVMI 102
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRFU (50S ribosomal protein L24P OS=Pyrococcus furiosus GN=rpl24p PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1 Query: 64 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 S RK RK + AP VR+ LMSAPLS +LR+KY VR++PVR D+V+++RG YKG EGKVV+V +++ I++E T K NG+ V I+PS V+I Sbjct: 5 SKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102
BLAST of CF417475 vs. ExPASy Swiss-Prot
Match: RL24_PYRKO (50S ribosomal protein L24P OS=Pyrococcus kodakaraensis GN=rpl24p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19 Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = 1 Query: 76 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 357 RK RK + AP +R +MSAPLS +LR+KY VR++P+R D+V+V+RG +KG EGKVV+V R++ IH+E +T +K +G+ V ++PS V+I Sbjct: 9 RKQRKFLYNAPLHLRGKIMSAPLSKELREKYGVRNLPIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVEGVTHKKTDGTEVFYPLHPSNVMI 102 The following BLAST results are available for this feature:
BLAST of CF417475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417475 ID=CF417475; Name=CF417475; organism=Citrus sinensis; type=EST; length=653bpback to top |