CF417476

Overview
NameCF417476
Unique NameCF417476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_XENLA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Xenopus laevis GN=gnb1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 120/228 (52.63%), Postives = 168/228 (73.68%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++C I+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  +SR FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L VY
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICPIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDSRCFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Rattus norvegicus GN=Gnb1 PE=1 SV=4)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_PONAB (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Pongo abelii GN=GNB1 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Mus musculus GN=Gnb1 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens GN=GNB1 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.113e-68
Identity = 118/228 (51.75%), Postives = 169/228 (74.12%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D  ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_CAEEL (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis elegans GN=gpb-1 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.779e-67
Identity = 120/228 (52.63%), Postives = 165/228 (72.37%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W S+   +VSASQDG+LIVW++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD TC LWDI TG + + F     +GHT DV+S+S+S  + R F+SG+CD++A+LWD R      +TF GHE  +N V FFP GN F TGSDD TCRLFDIR   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIVTSSGDMTCALWDIETGQQCTAF-----TGHTGDVMSLSLS-PDFRTFISGACDASAKLWDIR-DGMCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFDIRADQELAMY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_CAEBR (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis briggsae GN=gpb-1 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.779e-67
Identity = 120/228 (52.63%), Postives = 165/228 (72.37%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W S+   +VSASQDG+LIVW++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD TC LWDI TG + + F     +GHT DV+S+S+S  + R F+SG+CD++A+LWD R      +TF GHE  +N V FFP GN F TGSDD TCRLFDIR   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIVTSSGDMTCALWDIETGQQCTAF-----TGHTGDVMSLSLS-PDFRTFISGACDASAKLWDIR-DGMCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFDIRADQELAMY 264
[Close]
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_HOMAM (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homarus americanus GN=GBETA1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.962e-67
Identity = 121/228 (53.07%), Postives = 165/228 (72.37%), Query Frame = 1 
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W S+   +VSASQDG+LIVW++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC++V  +D  ++TSSGD TC LWDI TG + + F     +GHT DV+S+S+S  N R F SG+CD++A+LWD R      +TF GHE  +N V FFP+G+ F TGSDD TCRLFDIR   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFV--DDNQIVTSSGDMTCALWDIETGQQCTQF-----TGHTGDVMSLSLS-PNMRTFTSGACDASAKLWDIR-DGMCRQTFPGHESDINAVTFFPNGHAFATGSDDATCRLFDIRADQELAMY 264
The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
GBB1_XENLA6.113e-6852.63Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_RAT6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_PONAB6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_MOUSE6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_HUMAN6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CANFA6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_BOVIN6.113e-6851.75Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CAEEL1.779e-6752.63Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_CAEBR1.779e-6752.63Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_HOMAM3.962e-6753.07Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-406 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bp
TGTAGGACCTTGCAAGGCCACGCTGGCAAGGTATATTCATTGGACTGGAC
TTCCGAAAGGAATCGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATAG
TGTGGAATGCTCTTACAAGCCAGAAAACTCATGCTATAAAACTGCCTTGT
GCTTGGGTAATGACTTGTGCCTTCTCTCCAACTGGTCAATCTGTTGCCTG
TGGTGGTCTTGATAGTGTTTGCTCCATTTTCAACCTGAATTCTCCTACTG
ACAAGGACGGGAATTTACCAGTATCAAGAATGCTTAGTGGGCACAAGGGT
TATGTGTCCTGCTGTCAGTATGTTCCTGATGAGGACACTCACCTAATTAC
CAGTTCAGGTGACCAAACCTGTGTTTTGTGGGATATTACTACAGGCCTTA
GAACTTCTGTTTTTGGAGGAGAATTTCAGTCTGGGCACACTGCTGATGTG
TTAAGTGTCTCAATTAGTGGTTCAAACTCAAGGATGTTTGTGTCTGGTTC
CTGTGATTCTACTGCCCGATTGTGGGATACTCGTGTTGCAAGTCGAGCAG
TGCGCACATTTCATGGGCATGAGGGANATGTTAACACTGTGAAGTTCTTT
CCAGATGGCAATAGGTTTGGAACTGGCTCAGACGATGGAACTTGCAGATT
ATTTGATATCAGGACTGGGCACCAACTCCNAGTGTATTATCAGCAGCACG
GTGAGAATGAGATCCCACATGTGACGTC
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