CF417476

Overview
NameCF417476
Unique NameCF417476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR38_HUMAN (WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 55/220 (25.00%), Postives = 97/220 (44.09%), Query Frame = 1
Query:   10 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 669
            L GH G V    ++ + +   SAS D  + +W+   ++    +K     V T +FSP  + +A GG D    ++++ S         + R+L GH+  +    + P  +  L T S D T  +WD+   + T     +   GH+A++  +  S S   +  SGS D T  +W    +S  ++   GH   V ++ F PD     +       +++D  TG
Sbjct:   59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-------QMLRLLVGHRDSIQSSDFSPTVNC-LATGSWDSTVHIWDLR--MVTPAVSHQALEGHSANISCLCYSASG--LLASGSWDKTIHIWKPTTSSLLIQ-LKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTG 265          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_XENLA (WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 52/218 (23.85%), Postives = 106/218 (48.62%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657
            R++       +S+ ++ +   + + S  G++ ++   T +K +++     ++++ A+SP G+ +A G +D + +IF++ +     G L     L GH   +    +  D    L+T+S D    ++D+      +       SGH + VL+V+ S  ++  FVS S D + ++WD   A   V TF  H+  V  VK+  +G++  +  DD    ++D
Sbjct:  100 RSIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSTDSQL-LVTASDDGYIKIYDVQHASLAATL-----SGHGSWVLNVAFSPDDAH-FVSSSSDKSVKVWDVS-ARTCVHTFLDHQDQVWGVKYNRNGSKIVSVGDDQEIHVYD 302          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 54/222 (24.32%), Postives = 96/222 (43.24%), Query Frame = 1
Query:   19 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660
            H   V +L   S   ++ SA +D  + VWN  T      I+       WV        G+++     D+   ++N +              L  H+ YV    Y  D +   + S+G D+   LWD+ T    +       +    G    + S++++ S + + VSGS ++  R+WD R   R+++   GH   V  +   PDGN+  +GS DGT +++++
Sbjct:   27 HRNGVNALQLDSNNGKLYSAGRDAIIRVWNTRTESNDKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAHKGF-------CMSTLRTHRDYVQALAYAKDREQ--VASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGT-VIVSGSTENILRIWDPRTCMRSMK-LRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNL 237          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR47_MOUSE (WD repeat-containing protein 47 OS=Mus musculus GN=Wdr47 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  169 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV--PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAV-RTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYY 690
            A+SP GQ +A G  D    +   N+ T       +    S H G +    ++  P+    ++ S+G   C ++  TT  +    G    SGHT  +L++     +  M  SGS D T R WD RV S  R V  TFHG    V +V   P G    TG +D +C L+DIR G  +  Y+
Sbjct:  669 AWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLE--FSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIY--TTDCQRGQ-GLHALSGHTGHILALYTW--SGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH 840          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR47_HUMAN (WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  169 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV--PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAV-RTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYY 690
            A+SP GQ +A G  D    +   N+ T       +    S H G +    ++  P+    ++ S+G   C ++  TT  +    G    SGHT  +L++     +  M  SGS D T R WD RV S  R V  TFHG    V +V   P G    TG +D +C L+DIR G  +  Y+
Sbjct:  668 AWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLE--FSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIY--TTDCQRGQ-GLHALSGHTGHILALYTW--SGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH 839          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 61/272 (22.43%), Postives = 106/272 (38.97%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS---------------------------------------ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 678
            T QGH   V S+ W+ +  ++ S  ++G++++W+  T ++   A+     W+   ++ P   +  C  + S          + KDG++ V         R L+GH   V+C ++    D  L ++S D+T  +W    G+      G    GH  + +++S                                       + G      VSGS D T  LW      + +    GH+  +N V F PD     + S D + +L+D RTG  L
Sbjct:  151 TCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVAS----------SSKDGSVRVWDTTAGRCERTLTGHAQSVTCLRW--GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGH---GHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYL 407          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 54/225 (24.00%), Postives = 101/225 (44.89%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNR--FGTGSDDGTCRLFDIRT 666
            + L   + +V S+D       I+++  DG + +WN  T     + ++ P   V T  F    Q +  G  D+   ++N N+       +   +    H  Y+ C    P    ++++SS D    LWD   G   T VF      GH+  V+S++ +  ++  F + S D T ++W    +     T  GHE  +N+V++F  G +    +G+DD   +++D ++
Sbjct:    9 KKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNT-------MEKIKSFEAHADYIRCIIVHPTL-PYILSSSDDMFIKLWDYEKGWSNTQVF-----EGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSIN-SPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQS 219          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_CHICK (WD repeat-containing protein 61 OS=Gallus gallus GN=WDR61 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 51/208 (24.52%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   34 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657
            +SL ++ +   + + S  G++ ++   T +K +++     ++++ A+SP G+ +A G +D + +IF++ +     G L     L GH   +    + PD    L+T+S D    ++D+              SGH + VL+V+    ++  FVS S D + ++WD    +  V TF  H+  V  VK+   G++  +  DD    ++D
Sbjct:  110 WSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTL-----SGHGSWVLNVAFCPDDTH-FVSSSSDKSVKVWDAGTRT-CVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQEIHIYD 302          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/222 (24.32%), Postives = 96/222 (43.24%), Query Frame = 1
Query:   19 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660
            H   V +L   S   ++ SA +D  + VWN  T      I+       WV        G+++     D+   ++N +              L  H+ YV    Y  D +   + S+G D+   LWD+ T    +       +    G    + S++++ S + + VSGS ++  R+WD R   R+++   GH   V  +   PDGN+  +GS DGT +++++
Sbjct:   27 HRNGVNALQLDSNNGKLYSAGRDAIIRVWNTRTEANEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAHKGF-------CMSTLRTHRDYVQALAYAKDREQ--VASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGT-VIVSGSTENILRIWDPRTCMRSMK-LRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNL 237          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROVI (Ribosome biogenesis protein WDR12 homolog OS=Drosophila virilis GN=GJ17641 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 69/253 (27.27%), Postives = 110/253 (43.48%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFN--LNSPTD------KDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705
            T+ GH   + ++DW S   E  R VS SQD   ++W    +         C      V +   SP  Q  A G  D++  I++  L+  ++      K+  +   +M L GH+  +S  Q++  + T L+T S D T  +WD+   G++T +            +   S S  N R+ V+ S D   RL+D R    +V   T+ GH   V TV +   +   F +GS D   +L+D R+          HGE
Sbjct:  139 TIPGHTAPIKAVDWISMDDENGRFVSTSQDQTAMLWQWNIASNAVECVSVCKGHERGVDSVCVSPDAQRFATGSWDTMLKIWSAGLDDTSEGTAKRVKESGVRTPKMTLQGHRESISAVQWM--DATTLVTGSWDHTLKVWDLQLEGIKTEI-------STNKSIFDASYSKLN-RLIVTASADKNLRLYDARTNQGSVVRNTYLGHNAWVQTVMWSNTEEFLFVSGSYDTQNKLWDCRSPKAPLYDLLGHGE 381          
The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
WDR38_HUMAN4.757e-1225.00WD repeat-containing protein 38 OS=Homo sapiens GN... [more]
WDR61_XENLA6.213e-1223.85WD repeat-containing protein 61 OS=Xenopus laevis ... [more]
WDR48_DROVI6.213e-1224.32WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR47_MOUSE6.213e-1231.84WD repeat-containing protein 47 OS=Mus musculus GN... [more]
WDR47_HUMAN6.213e-1231.84WD repeat-containing protein 47 OS=Homo sapiens GN... [more]
NLE1_BOVIN6.213e-1222.43Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
COPB2_DICDI6.213e-1224.00Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
WDR61_CHICK8.115e-1224.52WD repeat-containing protein 61 OS=Gallus gallus G... [more]
WDR48_DROMO8.115e-1224.32WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR12_DROVI8.115e-1227.27Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-406 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bp
TGTAGGACCTTGCAAGGCCACGCTGGCAAGGTATATTCATTGGACTGGAC
TTCCGAAAGGAATCGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATAG
TGTGGAATGCTCTTACAAGCCAGAAAACTCATGCTATAAAACTGCCTTGT
GCTTGGGTAATGACTTGTGCCTTCTCTCCAACTGGTCAATCTGTTGCCTG
TGGTGGTCTTGATAGTGTTTGCTCCATTTTCAACCTGAATTCTCCTACTG
ACAAGGACGGGAATTTACCAGTATCAAGAATGCTTAGTGGGCACAAGGGT
TATGTGTCCTGCTGTCAGTATGTTCCTGATGAGGACACTCACCTAATTAC
CAGTTCAGGTGACCAAACCTGTGTTTTGTGGGATATTACTACAGGCCTTA
GAACTTCTGTTTTTGGAGGAGAATTTCAGTCTGGGCACACTGCTGATGTG
TTAAGTGTCTCAATTAGTGGTTCAAACTCAAGGATGTTTGTGTCTGGTTC
CTGTGATTCTACTGCCCGATTGTGGGATACTCGTGTTGCAAGTCGAGCAG
TGCGCACATTTCATGGGCATGAGGGANATGTTAACACTGTGAAGTTCTTT
CCAGATGGCAATAGGTTTGGAACTGGCTCAGACGATGGAACTTGCAGATT
ATTTGATATCAGGACTGGGCACCAACTCCNAGTGTATTATCAGCAGCACG
GTGAGAATGAGATCCCACATGTGACGTC
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