CF417476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR38_HUMAN (WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12 Identity = 55/220 (25.00%), Postives = 97/220 (44.09%), Query Frame = 1 Query: 10 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 669 L GH G V ++ + + SAS D + +W+ ++ +K V T +FSP + +A GG D ++++ S + R+L GH+ + + P + L T S D T +WD+ + T + GH+A++ + S S + SGS D T +W +S ++ GH V ++ F PD + +++D TG Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSG-------QMLRLLVGHRDSIQSSDFSPTVNC-LATGSWDSTVHIWDLR--MVTPAVSHQALEGHSANISCLCYSASG--LLASGSWDKTIHIWKPTTSSLLIQ-LKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTG 265
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_XENLA (WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 52/218 (23.85%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657 R++ +S+ ++ + + + S G++ ++ T +K +++ ++++ A+SP G+ +A G +D + +IF++ + G L L GH + + D L+T+S D ++D+ + SGH + VL+V+ S ++ FVS S D + ++WD A V TF H+ V VK+ +G++ + DD ++D Sbjct: 100 RSIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSTDSQL-LVTASDDGYIKIYDVQHASLAATL-----SGHGSWVLNVAFSPDDAH-FVSSSSDKSVKVWDVS-ARTCVHTFLDHQDQVWGVKYNRNGSKIVSVGDDQEIHVYD 302
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 54/222 (24.32%), Postives = 96/222 (43.24%), Query Frame = 1 Query: 19 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660 H V +L S ++ SA +D + VWN T I+ WV G+++ D+ ++N + L H+ YV Y D + + S+G D+ LWD+ T + + G + S++++ S + + VSGS ++ R+WD R R+++ GH V + PDGN+ +GS DGT +++++ Sbjct: 27 HRNGVNALQLDSNNGKLYSAGRDAIIRVWNTRTESNDKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAHKGF-------CMSTLRTHRDYVQALAYAKDREQ--VASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGT-VIVSGSTENILRIWDPRTCMRSMK-LRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNL 237
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR47_MOUSE (WD repeat-containing protein 47 OS=Mus musculus GN=Wdr47 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 1 Query: 169 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV--PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAV-RTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYY 690 A+SP GQ +A G D + N+ T + S H G + ++ P+ ++ S+G C ++ TT + G SGHT +L++ + M SGS D T R WD RV S R V TFHG V +V P G TG +D +C L+DIR G + Y+ Sbjct: 669 AWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLE--FSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIY--TTDCQRGQ-GLHALSGHTGHILALYTW--SGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH 840
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR47_HUMAN (WD repeat-containing protein 47 OS=Homo sapiens GN=WDR47 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 1 Query: 169 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV--PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAV-RTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYY 690 A+SP GQ +A G D + N+ T + S H G + ++ P+ ++ S+G C ++ TT + G SGHT +L++ + M SGS D T R WD RV S R V TFHG V +V P G TG +D +C L+DIR G + Y+ Sbjct: 668 AWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLE--FSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIY--TTDCQRGQ-GLHALSGHTGHILALYTW--SGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH 839
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 61/272 (22.43%), Postives = 106/272 (38.97%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS---------------------------------------ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 678 T QGH V S+ W+ + ++ S ++G++++W+ T ++ A+ W+ ++ P + C + S + KDG++ V R L+GH V+C ++ D L ++S D+T +W G+ G GH + +++S + G VSGS D T LW + + GH+ +N V F PD + S D + +L+D RTG L Sbjct: 151 TCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVAS----------SSKDGSVRVWDTTAGRCERTLTGHAQSVTCLRW--GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGH---GHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYL 407
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 54/225 (24.00%), Postives = 101/225 (44.89%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNR--FGTGSDDGTCRLFDIRT 666 + L + +V S+D I+++ DG + +WN T + ++ P V T F Q + G D+ ++N N+ + + H Y+ C P ++++SS D LWD G T VF GH+ V+S++ + ++ F + S D T ++W + T GHE +N+V++F G + +G+DD +++D ++ Sbjct: 9 KKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNT-------MEKIKSFEAHADYIRCIIVHPTL-PYILSSSDDMFIKLWDYEKGWSNTQVF-----EGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSIN-SPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQS 219
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_CHICK (WD repeat-containing protein 61 OS=Gallus gallus GN=WDR61 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 51/208 (24.52%), Postives = 101/208 (48.56%), Query Frame = 1 Query: 34 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657 +SL ++ + + + S G++ ++ T +K +++ ++++ A+SP G+ +A G +D + +IF++ + G L L GH + + PD L+T+S D ++D+ SGH + VL+V+ ++ FVS S D + ++WD + V TF H+ V VK+ G++ + DD ++D Sbjct: 110 WSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTL-----SGHGSWVLNVAFCPDDTH-FVSSSSDKSVKVWDAGTRT-CVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQEIHIYD 302
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 54/222 (24.32%), Postives = 96/222 (43.24%), Query Frame = 1 Query: 19 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660 H V +L S ++ SA +D + VWN T I+ WV G+++ D+ ++N + L H+ YV Y D + + S+G D+ LWD+ T + + G + S++++ S + + VSGS ++ R+WD R R+++ GH V + PDGN+ +GS DGT +++++ Sbjct: 27 HRNGVNALQLDSNNGKLYSAGRDAIIRVWNTRTEANEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAHKGF-------CMSTLRTHRDYVQALAYAKDREQ--VASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGT-VIVSGSTENILRIWDPRTCMRSMK-LRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNL 237
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROVI (Ribosome biogenesis protein WDR12 homolog OS=Drosophila virilis GN=GJ17641 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 69/253 (27.27%), Postives = 110/253 (43.48%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFN--LNSPTD------KDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705 T+ GH + ++DW S E R VS SQD ++W + C V + SP Q A G D++ I++ L+ ++ K+ + +M L GH+ +S Q++ + T L+T S D T +WD+ G++T + + S S N R+ V+ S D RL+D R +V T+ GH V TV + + F +GS D +L+D R+ HGE Sbjct: 139 TIPGHTAPIKAVDWISMDDENGRFVSTSQDQTAMLWQWNIASNAVECVSVCKGHERGVDSVCVSPDAQRFATGSWDTMLKIWSAGLDDTSEGTAKRVKESGVRTPKMTLQGHRESISAVQWM--DATTLVTGSWDHTLKVWDLQLEGIKTEI-------STNKSIFDASYSKLN-RLIVTASADKNLRLYDARTNQGSVVRNTYLGHNAWVQTVMWSNTEEFLFVSGSYDTQNKLWDCRSPKAPLYDLLGHGE 381 The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bpback to top |