CF417476

Overview
NameCF417476
Unique NameCF417476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROGR (Ribosome biogenesis protein WDR12 homolog OS=Drosophila grimshawi GN=GH13339 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 66/253 (26.09%), Postives = 107/253 (42.29%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----VMTCAFSPTGQSVACGGLDSVCSIFNL--------NSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705
            T+ GH   + ++DW S      R VS SQD   ++W              C      V + A SP  Q  A G  D++  +++         ++   K+  +   +M L GH+  +S  Q++  + T L+T S D T  +WD+   G++T +            +   + S  N R+ V+ S D   RL+D R    +V   T+ GH   V TV +   +   F +GS D   +L+D R+          HGE
Sbjct:  139 TIPGHTAPIKAVDWLSLDEVNGRFVSTSQDQTAMLWQWNIDSNAVDCVSVCKGHERSVDSVAVSPDAQRFATGSWDTMLKLWSAELEDAVEGSAKRAKESGVRTPKMTLQGHRESISAVQWM--DGTTLLTGSWDHTLKVWDLNLEGIKTEI-------STNKSIFDANFSKLN-RLIVTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNKLWDCRSPKAPLYDLLGHGE 381          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: MDV1_VANPO (Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 61/244 (25.00%), Postives = 104/244 (42.62%), Query Frame = 1
Query:   13 QGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT----------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------------DSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 669
            + H   VY +D+      + +A   D  + VW+     K   +    A +           +  GG D++  I+++N  T          + D N  +      H G ++   +   +  HL+++S D+T   WD+  G  ++T       +   T D++++    S+S  FV+GS             D   RLWD R + + VRTF GH   V ++KF  D     +GS D + R +D+RTG
Sbjct:  393 KAHENGVYCMDFDMPFGTLCTAGYLDHTVNVWDLTRKVKVAEMSGHLATIQCMQLGSHYNMLITGGKDAMLKIWDINLATQLYQEDQSSIESDYNSCI-HTFDSHSGGITALSF---DSVHLVSASQDKTIRQWDLVNGKCIQTIDLSSVVKQNQT-DIVNIPDFYSSSEPFVTGSLQCFDAALATGTRDGLVRLWDMR-SGKVVRTFMGHTNAVTSLKF--DSYNLISGSLDKSIRTWDLRTG 628          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  268 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 672
            P    LSGH+  V+   + P     ++T+S D T  +WD  TG        +F+    GHT  V  +S   S  ++  S S D T +LWD +     +RT HGH+  V++V   P+G+   + S D T ++++++TG+
Sbjct:   99 PEKYALSGHRSPVTRVIFHPVFSV-MVTASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY 225          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  268 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 672
            P    LSGH+  V+   + P     ++T+S D T  +WD  TG        +F+    GHT  V  +S   S  ++  S S D T +LWD +     +RT HGH+  V++V   P+G+   + S D T ++++++TG+
Sbjct:   99 PEKYALSGHRSPVTRVIFHPVFSV-MVTASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY 225          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 52/212 (24.53%), Postives = 92/212 (43.40%), Query Frame = 1
Query:   31 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 666
            V S  + S +  +V+ + D  + V+N  T  K    +    ++   A  PT   V     D +  ++      D D     +++  GH  YV    + P +     ++S D+T  +W + +        G  +  +  D  +    G +    ++GS DSTA++WD +  S  V+T  GH   ++ V F P+     TGS+DGT R++   T
Sbjct:   60 VRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW------DWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFTLDGHQKGVNCVDYFT----GGDRPYLITGSDDSTAKVWDYQTKS-CVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTT 260          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROER (Ribosome biogenesis protein WDR12 homolog OS=Drosophila erecta GN=GG10358 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 64/253 (25.30%), Postives = 107/253 (42.29%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR---------MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705
            T+ GH   + ++DW S   E  R VS SQD   ++W       +      C      V + + SP G   A G  D++  +++       +G+    +          L GH+  VS  Q++  + + L+T S D T  +WD++  G++T +            +   S S  N R+ ++ S D   RL+D R    +V   T+ GH   V TV +   +   F +G+ D   +L+D R+          HGE
Sbjct:  140 TISGHTAPIKAVDWISLDEETGRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSVSVSPDGLRFATGSWDTMLKVWSAEQEDAAEGSSKRMKESGVRTPKITLQGHRESVSAVQWM--DASTLLTGSWDHTLKVWDLSLEGIKTEI-------STNKSIFDASYSKLN-RLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGE 382          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 65/249 (26.10%), Postives = 97/249 (38.96%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFP-------------------------DGNRFGTGSDDGTCRLFDIRTGHQL 678
            TL  H   V  L +      + SAS+D  + +W+         +K     VM   F P       GGL + CS        D        + L GH   VS  +++PD +T L+++S D+T  +W +++G     F     SGH A+ +  ++   + R  VS S D T+R+WD       +    GHE  V    F P                          G    TGS D T +L+D  +G  L
Sbjct:  100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPR------GGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGET-LVSASRDKTIRVWQVSSGYCIKTF-----SGH-AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKME-LRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCL 334          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 58/233 (24.89%), Postives = 93/233 (39.91%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQH 699
            +T+ GH   V  + ++     + + S D ++ VWN +       +      +   ++S   Q +A    D+   IF++ S           R + GH  YV CC + P     LI S+G D+T  +WD  TGL            H+  + S+S +   + M  S S D   R+WD    S            V  V F P+G    +   D + +L+D +    L  YY  H
Sbjct:  207 KTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGA-------CLRTMRGHTNYVFCCSFNPQSS--LIASAGFDETVRVWDFKTGLCVKCI-----PAHSDPITSISYNHDGNTMATS-SYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSPNGKYLLSAQLDSSLKLWDPKKAKPLK-YYNGH 423          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_MOUSE (WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 47/208 (22.60%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   34 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657
            ++L ++ +   + + +  G++ ++   + +K +++     ++++ A+SP G+ +A G +D + +IF++ +     G L     L GH   +    + PD    L+T+S D    ++D+              SGH + VL+V+    ++  FVS S D + ++WD    +  + TF  H+  V  VK+  +G++  +  DD    ++D
Sbjct:  110 WTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRT-CIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYD 302          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROYA (Ribosome biogenesis protein WDR12 homolog OS=Drosophila yakuba GN=GE13328 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 65/253 (25.69%), Postives = 110/253 (43.48%), Query Frame = 1
Query:    7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFNL--------NSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705
            T+ GH   + ++DW S   E  R VS SQD   ++W       +      C      V + + SP G   A G  D++  +++         +S   K+  +   ++ L GH+  VS  Q++  + + L+T S D T  +WD++  G++T +            +   S S  N R+ ++ S D   RL+D R    +V   T+ GH   V TV +   +   F +G+ D   +L+D R+          HGE
Sbjct:  140 TISGHTAPIKAVDWISLDEETGRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSVSVSPDGLRFATGSWDTMLKVWSAEVEDAVEGSSKRMKESGVRTPKITLQGHRESVSAVQWM--DASTLLTGSWDHTLKVWDLSLEGIKTEI-------STNKSIFDASYSKLN-RLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGE 382          
The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
WDR12_DROGR4.027e-1126.09Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
MDV1_VANPO4.027e-1125.00Mitochondrial division protein 1 OS=Vanderwaltozym... [more]
LIS1_XENTR4.027e-1131.16Lissencephaly-1 homolog OS=Xenopus tropicalis GN=p... [more]
LIS1A_XENLA4.027e-1131.16Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
COB21_ORYSJ4.027e-1124.53Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
WDR12_DROER5.260e-1125.30Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
NUDF_CRYNE5.260e-1126.10Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
YH92_CAEEL6.869e-1124.89Uncharacterized WD repeat-containing protein ZC302... [more]
WDR61_MOUSE6.869e-1122.60WD repeat-containing protein 61 OS=Mus musculus GN... [more]
WDR12_DROYA6.869e-1125.69Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-406 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bp
TGTAGGACCTTGCAAGGCCACGCTGGCAAGGTATATTCATTGGACTGGAC
TTCCGAAAGGAATCGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATAG
TGTGGAATGCTCTTACAAGCCAGAAAACTCATGCTATAAAACTGCCTTGT
GCTTGGGTAATGACTTGTGCCTTCTCTCCAACTGGTCAATCTGTTGCCTG
TGGTGGTCTTGATAGTGTTTGCTCCATTTTCAACCTGAATTCTCCTACTG
ACAAGGACGGGAATTTACCAGTATCAAGAATGCTTAGTGGGCACAAGGGT
TATGTGTCCTGCTGTCAGTATGTTCCTGATGAGGACACTCACCTAATTAC
CAGTTCAGGTGACCAAACCTGTGTTTTGTGGGATATTACTACAGGCCTTA
GAACTTCTGTTTTTGGAGGAGAATTTCAGTCTGGGCACACTGCTGATGTG
TTAAGTGTCTCAATTAGTGGTTCAAACTCAAGGATGTTTGTGTCTGGTTC
CTGTGATTCTACTGCCCGATTGTGGGATACTCGTGTTGCAAGTCGAGCAG
TGCGCACATTTCATGGGCATGAGGGANATGTTAACACTGTGAAGTTCTTT
CCAGATGGCAATAGGTTTGGAACTGGCTCAGACGATGGAACTTGCAGATT
ATTTGATATCAGGACTGGGCACCAACTCCNAGTGTATTATCAGCAGCACG
GTGAGAATGAGATCCCACATGTGACGTC
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