CF417476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROGR (Ribosome biogenesis protein WDR12 homolog OS=Drosophila grimshawi GN=GH13339 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 66/253 (26.09%), Postives = 107/253 (42.29%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----VMTCAFSPTGQSVACGGLDSVCSIFNL--------NSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705 T+ GH + ++DW S R VS SQD ++W C V + A SP Q A G D++ +++ ++ K+ + +M L GH+ +S Q++ + T L+T S D T +WD+ G++T + + + S N R+ V+ S D RL+D R +V T+ GH V TV + + F +GS D +L+D R+ HGE Sbjct: 139 TIPGHTAPIKAVDWLSLDEVNGRFVSTSQDQTAMLWQWNIDSNAVDCVSVCKGHERSVDSVAVSPDAQRFATGSWDTMLKLWSAELEDAVEGSAKRAKESGVRTPKMTLQGHRESISAVQWM--DGTTLLTGSWDHTLKVWDLNLEGIKTEI-------STNKSIFDANFSKLN-RLIVTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNKLWDCRSPKAPLYDLLGHGE 381
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: MDV1_VANPO (Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 61/244 (25.00%), Postives = 104/244 (42.62%), Query Frame = 1 Query: 13 QGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT----------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------------DSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 669 + H VY +D+ + +A D + VW+ K + A + + GG D++ I+++N T + D N + H G ++ + + HL+++S D+T WD+ G ++T + T D++++ S+S FV+GS D RLWD R + + VRTF GH V ++KF D +GS D + R +D+RTG Sbjct: 393 KAHENGVYCMDFDMPFGTLCTAGYLDHTVNVWDLTRKVKVAEMSGHLATIQCMQLGSHYNMLITGGKDAMLKIWDINLATQLYQEDQSSIESDYNSCI-HTFDSHSGGITALSF---DSVHLVSASQDKTIRQWDLVNGKCIQTIDLSSVVKQNQT-DIVNIPDFYSSSEPFVTGSLQCFDAALATGTRDGLVRLWDMR-SGKVVRTFMGHTNAVTSLKF--DSYNLISGSLDKSIRTWDLRTG 628
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 268 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 672 P LSGH+ V+ + P ++T+S D T +WD TG +F+ GHT V +S S ++ S S D T +LWD + +RT HGH+ V++V P+G+ + S D T ++++++TG+ Sbjct: 99 PEKYALSGHRSPVTRVIFHPVFSV-MVTASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY 225
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 268 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 672 P LSGH+ V+ + P ++T+S D T +WD TG +F+ GHT V +S S ++ S S D T +LWD + +RT HGH+ V++V P+G+ + S D T ++++++TG+ Sbjct: 99 PEKYALSGHRSPVTRVIFHPVFSV-MVTASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGY 225
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 52/212 (24.53%), Postives = 92/212 (43.40%), Query Frame = 1 Query: 31 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 666 V S + S + +V+ + D + V+N T K + ++ A PT V D + ++ D D +++ GH YV + P + ++S D+T +W + + G + + D + G + ++GS DSTA++WD + S V+T GH ++ V F P+ TGS+DGT R++ T Sbjct: 60 VRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW------DWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFTLDGHQKGVNCVDYFT----GGDRPYLITGSDDSTAKVWDYQTKS-CVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTT 260
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROER (Ribosome biogenesis protein WDR12 homolog OS=Drosophila erecta GN=GG10358 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 64/253 (25.30%), Postives = 107/253 (42.29%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR---------MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705 T+ GH + ++DW S E R VS SQD ++W + C V + + SP G A G D++ +++ +G+ + L GH+ VS Q++ + + L+T S D T +WD++ G++T + + S S N R+ ++ S D RL+D R +V T+ GH V TV + + F +G+ D +L+D R+ HGE Sbjct: 140 TISGHTAPIKAVDWISLDEETGRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSVSVSPDGLRFATGSWDTMLKVWSAEQEDAAEGSSKRMKESGVRTPKITLQGHRESVSAVQWM--DASTLLTGSWDHTLKVWDLSLEGIKTEI-------STNKSIFDASYSKLN-RLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGE 382
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 65/249 (26.10%), Postives = 97/249 (38.96%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFP-------------------------DGNRFGTGSDDGTCRLFDIRTGHQL 678 TL H V L + + SAS+D + +W+ +K VM F P GGL + CS D + L GH VS +++PD +T L+++S D+T +W +++G F SGH A+ + ++ + R VS S D T+R+WD + GHE V F P G TGS D T +L+D +G L Sbjct: 100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPR------GGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGET-LVSASRDKTIRVWQVSSGYCIKTF-----SGH-AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKME-LRGHEHVVECAVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCL 334
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 58/233 (24.89%), Postives = 93/233 (39.91%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQH 699 +T+ GH V + ++ + + S D ++ VWN + + + ++S Q +A D+ IF++ S R + GH YV CC + P LI S+G D+T +WD TGL H+ + S+S + + M S S D R+WD S V V F P+G + D + +L+D + L YY H Sbjct: 207 KTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGA-------CLRTMRGHTNYVFCCSFNPQSS--LIASAGFDETVRVWDFKTGLCVKCI-----PAHSDPITSISYNHDGNTMATS-SYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSPNGKYLLSAQLDSSLKLWDPKKAKPLK-YYNGH 423
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR61_MOUSE (WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 47/208 (22.60%), Postives = 102/208 (49.04%), Query Frame = 1 Query: 34 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFD 657 ++L ++ + + + + G++ ++ + +K +++ ++++ A+SP G+ +A G +D + +IF++ + G L L GH + + PD L+T+S D ++D+ SGH + VL+V+ ++ FVS S D + ++WD + + TF H+ V VK+ +G++ + DD ++D Sbjct: 110 WTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRT-CIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYD 302
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR12_DROYA (Ribosome biogenesis protein WDR12 homolog OS=Drosophila yakuba GN=GE13328 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 65/253 (25.69%), Postives = 110/253 (43.48%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFNL--------NSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGXVNTVKF-FPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGE 705 T+ GH + ++DW S E R VS SQD ++W + C V + + SP G A G D++ +++ +S K+ + ++ L GH+ VS Q++ + + L+T S D T +WD++ G++T + + S S N R+ ++ S D RL+D R +V T+ GH V TV + + F +G+ D +L+D R+ HGE Sbjct: 140 TISGHTAPIKAVDWISLDEETGRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSVSVSPDGLRFATGSWDTMLKVWSAEVEDAVEGSSKRMKESGVRTPKITLQGHRESVSAVQWM--DASTLLTGSWDHTLKVWDLSLEGIKTEI-------STNKSIFDASYSKLN-RLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGE 382 The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bpback to top |