CF417476

Overview
NameCF417476
Unique NameCF417476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_CRIGR (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Cricetulus griseus GN=GNB1 PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 8.827e-67
Identity = 117/228 (51.32%), Postives = 167/228 (73.25%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++   D  ++TSS D TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+LWD R      +TF GHE  +N + FFP+GN F TGSDD TCRLFD+R   +L  Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--NDNQIVTSSEDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB_LYMST (Guanine nucleotide-binding protein subunit beta OS=Lymnaea stagnalis PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.568e-66
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W S+   +VSASQDG+LIVW+  T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD +C LWDI TG +T+ F     +GHT DV+S+S S  + R FVSG+CD++A+LWD R      +TF GHE  +N + +FP+G+ F TGSDD TCRLFDIR   ++ +Y
Sbjct:   50 RTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWDGYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFI--DDNSIVTSSGDMSCALWDIETGQQTTSF-----TGHTGDVMSLSTS-PDFRTFVSGACDASAKLWDVR-DGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLFDIRADQEIGMY 265          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 8.262e-65
Identity = 115/231 (49.78%), Postives = 166/231 (71.86%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQ 696
            RTL+GH  K+Y++ W ++   +VSASQDG+LIVW+  T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL S   ++GN+ VSR LS H GY+SCC+++  +D +++TSSGD TC LWDI TG + +VF      GHT D +S+++S  + ++F+SG+CD++A+LWD R  +   +TF GHE  +N + FFP+G    TGSDD +CRLFD+R   +L  Y Q+
Sbjct:   49 RTLRGHLAKIYAMHWATDSKLLVSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKS---REGNVKVSRELSAHTGYLSCCRFL--DDNNIVTSSGDTTCALWDIETGQQKTVF-----VGHTGDCMSLAVS-PDYKLFISGACDASAKLWDVREGT-CRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQE 267          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB1_DROME (Guanine nucleotide-binding protein subunit beta-1 OS=Drosophila melanogaster GN=Gbeta13F PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.079e-64
Identity = 117/228 (51.32%), Postives = 164/228 (71.93%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LIVW++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD +C LWDI TGL+ + F      GHT DV+++S++    + FVSG+CD++A+LWD R      +TF GHE  +N V FFP+G  F TGSDD TCRLFDIR   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGNDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNMCSIYNLKT---REGNVRVSRELPGHGGYLSCCRFL--DDNQIVTSSGDMSCGLWDIETGLQVTSF-----LGHTGDVMALSLA-PQCKTFVSGACDASAKLWDIR-EGVCKQTFPGHESDINAVTFFPNGQAFATGSDDATCRLFDIRADQELAMY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB2_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4)

HSP 1 Score: 246.128 bits (627), Expect = 1.409e-64
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE  +N V FFP+G  F TGSDD TCRLFD+R   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQTVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB2_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.409e-64
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE  +N V FFP+G  F TGSDD TCRLFD+R   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQTVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB2_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.409e-64
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE  +N V FFP+G  F TGSDD TCRLFD+R   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQTVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB2_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Bos taurus GN=GNB2 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.409e-64
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W ++   +VSASQDG+LI+W++ T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  +ITSSGD TC LWDI TG +T  F     +GH+ DV+S+S++  + R FVSG+CD++ +LWD R  S   +TF GHE  +N V FFP+G  F TGSDD TCRLFD+R   +L +Y
Sbjct:   49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDNQIITSSGDTTCALWDIETGQQTVGF-----AGHSGDVMSLSLA-PDGRTFVSGACDASIKLWDVR-DSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY 264          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB_LOLFO (Guanine nucleotide-binding protein subunit beta OS=Loligo forbesi PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.100e-64
Identity = 115/228 (50.44%), Postives = 164/228 (71.93%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            RTL+GH  K+Y++ W S+   +VSASQDG+LIVW+  T+ K HAI L  +WVMTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D  ++TSSGD TC LW+I TG + + FG     GHT DV+S+S++  + R FVSG+CD++A+L+D R      +TF GHE  +N + +FP+G  F TGSDD TCRLFDIR   ++ +Y
Sbjct:   50 RTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWDGYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFI--DDNQIVTSSGDMTCALWNIETGNQITSFG-----GHTGDVMSLSLA-PDMRTFVSGACDASAKLFDIR-DGICKQTFTGHESDINAITYFPNGFAFATGSDDATCRLFDIRADQEIGMY 265          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBB_DICDI (Guanine nucleotide-binding protein subunit beta OS=Dictyostelium discoideum GN=gpbA PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.135e-64
Identity = 114/228 (50.00%), Postives = 159/228 (69.74%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            R L+GH  K+Y++ W  +   +VSASQDG+L+VW+ LT+ K HAI L  +WVMTCA+SPT   VACGGLD++CSI+NL S   ++  + V R L+ H GY+SCC+++   D  ++TSSGD TC+LWD+  G + + F     S H  DV+SVS+S  +   F+SG+CD+TA+LWD R + + V+TF GHE  +N V++FP+G  FGTGSDD +CRLFDIR   +L  Y
Sbjct:   56 RNLKGHLAKIYAMHWAEDNVHLVSASQDGKLLVWDGLTTNKVHAIPLRSSWVMTCAYSPTANFVACGGLDNICSIYNLRS---REQPIRVCRELNSHTGYLSCCRFL--NDRQIVTSSGDMTCILWDVENGTKITEF-----SDHNGDVMSVSVS-PDKNYFISGACDATAKLWDLR-SGKCVQTFTGHEADINAVQYFPNGLSFGTGSDDASCRLFDIRADRELMQY 271          
The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
GBB1_CRIGR8.827e-6751.32Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB_LYMST2.568e-6651.32Guanine nucleotide-binding protein subunit beta OS... [more]
GBB3_MOUSE8.262e-6549.78Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_DROME1.079e-6451.32Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB2_RAT1.409e-6451.32Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_MOUSE1.409e-6451.32Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_HUMAN1.409e-6451.32Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_BOVIN1.409e-6451.32Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB_LOLFO4.100e-6450.44Guanine nucleotide-binding protein subunit beta OS... [more]
GBB_DICDI9.135e-6450.00Guanine nucleotide-binding protein subunit beta OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-406 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bp
TGTAGGACCTTGCAAGGCCACGCTGGCAAGGTATATTCATTGGACTGGAC
TTCCGAAAGGAATCGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATAG
TGTGGAATGCTCTTACAAGCCAGAAAACTCATGCTATAAAACTGCCTTGT
GCTTGGGTAATGACTTGTGCCTTCTCTCCAACTGGTCAATCTGTTGCCTG
TGGTGGTCTTGATAGTGTTTGCTCCATTTTCAACCTGAATTCTCCTACTG
ACAAGGACGGGAATTTACCAGTATCAAGAATGCTTAGTGGGCACAAGGGT
TATGTGTCCTGCTGTCAGTATGTTCCTGATGAGGACACTCACCTAATTAC
CAGTTCAGGTGACCAAACCTGTGTTTTGTGGGATATTACTACAGGCCTTA
GAACTTCTGTTTTTGGAGGAGAATTTCAGTCTGGGCACACTGCTGATGTG
TTAAGTGTCTCAATTAGTGGTTCAAACTCAAGGATGTTTGTGTCTGGTTC
CTGTGATTCTACTGCCCGATTGTGGGATACTCGTGTTGCAAGTCGAGCAG
TGCGCACATTTCATGGGCATGAGGGANATGTTAACACTGTGAAGTTCTTT
CCAGATGGCAATAGGTTTGGAACTGGCTCAGACGATGGAACTTGCAGATT
ATTTGATATCAGGACTGGGCACCAACTCCNAGTGTATTATCAGCAGCACG
GTGAGAATGAGATCCCACATGTGACGTC
back to top