CF417476

Overview
NameCF417476
Unique NameCF417476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  157 VMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDG--NLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQH 699
            V   AFS      A G  DS   +++   N P    G  N P+ +  L GH   V      P ++  +++ S D    LW   T      +     +GH A +  V  S      F + S D TARLWD   A+  +R F GH+  V+ V F P+     TGS D T R++D+RTG  + V+   H
Sbjct:  352 VNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKE-FILSCSEDGFTRLWSKDTKSTIVKY-----AGHNAPIWDVQFSPFGY-YFATASHDQTARLWDVEHAA-PLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHH 529          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 55/220 (25.00%), Postives = 91/220 (41.36%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNR--FGTGSDDGTCRLFD 657
            R L   + +V S+D       ++++  +G + VWN  T       ++    V    F      V  G  D    +FN N+       L    M   H  Y+ C    P +   ++TSS D    LWD       S    +   GHT  V+ + I+  ++  F S S D T ++W    +S    T  GHE  VN + ++  G++    +G+DD   +++D
Sbjct:    9 RKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNT-------LERVHMFEAHSDYIRCIAVHPTQP-FILTSSDDMLIKLWDWDKKWSCS----QVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNF-TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWD 215          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 52/212 (24.53%), Postives = 91/212 (42.92%), Query Frame = 1
Query:   31 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 666
            V S  + + +  +V+ + D  + V+N  T  K    +    ++   A  PT   V     D +  ++      D D     +++  GH  YV    + P +     ++S D+T  +W + +        G  +  +  D  +    G +    ++GS D TA++WD +  S  V+T  GH   V+ V F P+     TGS+DGT RL+   T
Sbjct:   60 VRSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLW------DWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFTLDGHSKGVNCVDYFT----GGDRPYLITGSDDQTAKVWDYQTKS-CVQTLEGHAHNVSAVCFHPELPIILTGSEDGTVRLWHSTT 260          
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: AHI1_RAT (Jouberin OS=Rattus norvegicus GN=Ahi1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 63/240 (26.25%), Postives = 103/240 (42.92%), Query Frame = 1
Query:    4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVW-NALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW-------DITTGLRTSVFGGEFQSGHTADV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTV--KFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687
            R L GH   +Y LDW+ +   +V++S DG   VW N + S  T  +    ++V T  F P T + V  G  DS+  I+ +++  D      + R L  HK +V+   +  DE  H+ +        +W       D+   +R      E +      V +S      N +  +  + DST R+ D R+   A R F G       +     P G    +GS+DG   +++  TG Q+ +Y
Sbjct:  499 RELCGHLNIIYDLDWSKDDRYLVTSSSDGTARVWKNEINSTSTFRVLPHPSFVYTARFHPATRELVVTGCYDSMIRIWKVDAREDA---AILVRQLDVHKSFVNSICF-DDEGHHMYSGDCIGVIAVWDTYVKVTDVQHSVRHWTINKEIKETEFRGVPVSYLEVHPNGKRLLIHTKDSTLRIMDLRIL--AARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVWNPETGEQVAMY 732          
The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
TAF73_SCHPO8.972e-1131.18Transcription initiation factor TFIID subunit taf7... [more]
COPB2_RAT8.972e-1125.00Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COB23_ORYSJ8.972e-1124.53Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
AHI1_RAT8.972e-1126.25Jouberin OS=Rattus norvegicus GN=Ahi1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-406 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bp
TGTAGGACCTTGCAAGGCCACGCTGGCAAGGTATATTCATTGGACTGGAC
TTCCGAAAGGAATCGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATAG
TGTGGAATGCTCTTACAAGCCAGAAAACTCATGCTATAAAACTGCCTTGT
GCTTGGGTAATGACTTGTGCCTTCTCTCCAACTGGTCAATCTGTTGCCTG
TGGTGGTCTTGATAGTGTTTGCTCCATTTTCAACCTGAATTCTCCTACTG
ACAAGGACGGGAATTTACCAGTATCAAGAATGCTTAGTGGGCACAAGGGT
TATGTGTCCTGCTGTCAGTATGTTCCTGATGAGGACACTCACCTAATTAC
CAGTTCAGGTGACCAAACCTGTGTTTTGTGGGATATTACTACAGGCCTTA
GAACTTCTGTTTTTGGAGGAGAATTTCAGTCTGGGCACACTGCTGATGTG
TTAAGTGTCTCAATTAGTGGTTCAAACTCAAGGATGTTTGTGTCTGGTTC
CTGTGATTCTACTGCCCGATTGTGGGATACTCGTGTTGCAAGTCGAGCAG
TGCGCACATTTCATGGGCATGAGGGANATGTTAACACTGTGAAGTTCTTT
CCAGATGGCAATAGGTTTGGAACTGGCTCAGACGATGGAACTTGCAGATT
ATTTGATATCAGGACTGGGCACCAACTCCNAGTGTATTATCAGCAGCACG
GTGAGAATGAGATCCCACATGTGACGTC
back to top