CF417476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1 Query: 157 VMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDG--NLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQH 699 V AFS A G DS +++ N P G N P+ + L GH V P ++ +++ S D LW T + +GH A + V S F + S D TARLWD A+ +R F GH+ V+ V F P+ TGS D T R++D+RTG + V+ H Sbjct: 352 VNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKE-FILSCSEDGFTRLWSKDTKSTIVKY-----AGHNAPIWDVQFSPFGY-YFATASHDQTARLWDVEHAA-PLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHH 529
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 55/220 (25.00%), Postives = 91/220 (41.36%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNR--FGTGSDDGTCRLFD 657 R L + +V S+D ++++ +G + VWN T ++ V F V G D +FN N+ L M H Y+ C P + ++TSS D LWD S + GHT V+ + I+ ++ F S S D T ++W +S T GHE VN + ++ G++ +G+DD +++D Sbjct: 9 RKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNT-------LERVHMFEAHSDYIRCIAVHPTQP-FILTSSDDMLIKLWDWDKKWSCS----QVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNF-TLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWD 215
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 52/212 (24.53%), Postives = 91/212 (42.92%), Query Frame = 1 Query: 31 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 666 V S + + + +V+ + D + V+N T K + ++ A PT V D + ++ D D +++ GH YV + P + ++S D+T +W + + G + + D + G + ++GS D TA++WD + S V+T GH V+ V F P+ TGS+DGT RL+ T Sbjct: 60 VRSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLW------DWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFTLDGHSKGVNCVDYFT----GGDRPYLITGSDDQTAKVWDYQTKS-CVQTLEGHAHNVSAVCFHPELPIILTGSEDGTVRLWHSTT 260
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: AHI1_RAT (Jouberin OS=Rattus norvegicus GN=Ahi1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 63/240 (26.25%), Postives = 103/240 (42.92%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVW-NALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW-------DITTGLRTSVFGGEFQSGHTADV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTV--KFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687 R L GH +Y LDW+ + +V++S DG VW N + S T + ++V T F P T + V G DS+ I+ +++ D + R L HK +V+ + DE H+ + +W D+ +R E + V +S N + + + DST R+ D R+ A R F G + P G +GS+DG +++ TG Q+ +Y Sbjct: 499 RELCGHLNIIYDLDWSKDDRYLVTSSSDGTARVWKNEINSTSTFRVLPHPSFVYTARFHPATRELVVTGCYDSMIRIWKVDAREDA---AILVRQLDVHKSFVNSICF-DDEGHHMYSGDCIGVIAVWDTYVKVTDVQHSVRHWTINKEIKETEFRGVPVSYLEVHPNGKRLLIHTKDSTLRIMDLRIL--AARKFVGAANYREKIHSTLTPCGTLLFSGSEDGIVYVWNPETGEQVAMY 732 The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bpback to top |