CF417476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14 Identity = 60/220 (27.27%), Postives = 96/220 (43.64%), Query Frame = 1 Query: 10 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 669 L GH G V S ++ + I S+S D + +W+ S+ H +K V T +FSP + +A GG D ++ + S +L GH + + P D+ L T S D T +WD+ T V GHT ++ + S S + SGS D T +W + ++ GH VN++ F PD + + T +++D TG Sbjct: 64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRR-------VHLLVGHCDSIQSSDFSPTSDS-LATGSWDSTVHIWDLRAS--TPVVSYHNLEGHTGNISCLCYSASG--LLASGSWDKTICVWKPTTNNLPLQ-LKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTG 270 HSP 2 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 55/207 (26.57%), Postives = 90/207 (43.48%), Query Frame = 1 Query: 10 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGS 630 L+GH V ++ ++ + ++ S D R IVW + ++ H + C + + FSPT S+A G DS I++L + T + L GH G +SC Y L + S D+T +W TT GHT V S++ S ++ S T ++WD + + + T G + F PDG +G+ Sbjct: 106 LKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP----VVSYHNLEGHTGNISCLCY--SASGLLASGSWDKTICVWKPTTNNLPLQL-----KGHTIWVNSLAFSPDELKL-ASAGYSRTVKVWDC-LTGKCLETLKGMLDVAHACIFTPDGKLLVSGA 299 HSP 3 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 53/211 (25.12%), Postives = 93/211 (44.08%), Query Frame = 1 Query: 19 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGXVNTVKFFPDGNRFGTGSDDGT 642 H G+V ++ + +++AS DG + VW + + + V +C FSP G+ +A D ++++ +L GH+ V + PD L + D+ ++W++ +G R + G S ++D S S +GS DST +WD R AS V ++H GH G ++ + + G +GS D T Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDV-------ARSKCLHVLKGHQRSVETVSFSPD-SKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDS------LATGSWDSTVHIWDLR-ASTPVVSYHNLEGHTGNISCLCYSASG-LLASGSWDKT 219
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14 Identity = 58/220 (26.36%), Postives = 98/220 (44.55%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIR 663 + L+GH G VYS + ++ + ++S S+D + W+ + T + V SP A G D +++ D P+ R+ +GH V C ++ P+ + +L T S D+T LW G +F +GH VLS++ S N + S D +LWD + + GH + ++ F PD + S D + R++DIR Sbjct: 336 KILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSF------DRTYPL-RIYAGHLADVDCVKFHPNSN-YLATGSTDKTVRLWSAQQGNSVRLF-----TGHRGPVLSLAFS-PNGKYLASAGEDQRLKLWDL-ASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIR 540 HSP 2 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 235 LNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHG 702 L D+D N ++L GH G V +++ D + L++ S D + WD+ + T ++ GH V + IS S F SGS D TARLW + +R + GH V+ VKF P+ N TGS D T RL+ + G+ + ++ G Sbjct: 321 LEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADS-SGLLSCSEDMSIRYWDLGSFTNTVLY-----QGHAYPVWDLDIS-PYSLYFASGSHDRTARLWSFD-RTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRG 469
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14 Identity = 64/221 (28.96%), Postives = 97/221 (43.89%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660 R L+GH+ V + ++ N VSAS D L +WN Q + V++ AFSP + + GG D+ ++N+ G + H +VSC ++ P D +I S G D +WD+ TG L T + GHT V SV++S S + S D ARLWD G +N + F P+ ++ G R+FD+ Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL------KGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKG-IRIFDL 265
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14 Identity = 64/221 (28.96%), Postives = 97/221 (43.89%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLFDI 660 R L+GH+ V + ++ N VSAS D L +WN Q + V++ AFSP + + GG D+ ++N+ G + H +VSC ++ P D +I S G D +WD+ TG L T + GHT V SV++S S + S D ARLWD G +N + F P+ ++ G R+FD+ Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL------KGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKG-IRIFDL 265
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14 Identity = 62/236 (26.27%), Postives = 107/236 (45.34%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGX-VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVYYQQHGENE 711 T++GH + ++ ++ + ++S D + +WN + V A+S +S+ D I+ + PT K +++ L GH YV CC + P + + +++ S D++ +WD+ TG+ H+ V +VS + S + SGS D R+WDT + V+T E V VKF P+G + + D T +L+D G L YQ H N+ Sbjct: 74 TIEGHTKSISAVKFSPCGKFLGTSSADKTVKIWNMSDLSCERTLTGHKLGVNDFAWSADSKSIVTASDDKTLKIYEV--PTVK-----MAKTLKGHTNYVFCCNFNP-QSSLVVSGSFDESVRIWDVRTGMCVKTL-----PAHSDPVSAVSFNRDGS-LITSGSYDGLVRIWDT-ANGQCVKTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDFGKGKTLK-QYQGHENNK 293
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14 Identity = 63/210 (30.00%), Postives = 92/210 (43.81%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDD 636 +L GH V S+ + IV+ SQ G + VW+ ++ + A + + F P G+ VA G D+ ++++ + G + R GH V C ++ PD L +++ D T LWD+T G S F GHT V V N + SGS D T R WD + V G G V +V F PDG +G D Sbjct: 58 SLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR----RKGCVFRYR---GHSQAVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEF-----PGHTGPVNVVEFH-PNEYLLASGSSDRTIRFWDLE-KFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14 Identity = 63/210 (30.00%), Postives = 92/210 (43.81%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDD 636 +L GH V S+ + IV+ SQ G + VW+ ++ + A + + F P G+ VA G D+ ++++ + G + R GH V C ++ PD L +++ D T LWD+T G S F GHT V V N + SGS D T R WD + V G G V +V F PDG +G D Sbjct: 58 SLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR----RKGCVFRYR---GHSQAVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEF-----PGHTGPVNVVEFH-PNEYLLASGSSDRTIRFWDLE-KFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14 Identity = 56/229 (24.45%), Postives = 101/229 (44.10%), Query Frame = 1 Query: 7 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGX--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLXVY 687 TL GH+ + S+ ++ + S++ D +I+W A + + A+S + D ++++ S + L GH +V CC + P + +++ S D++ +W++ TG S H+ + +V+ + N + VSGS D R+WD + + +RT EG V+ VKF P+G T + D T +L+D G L Y Sbjct: 34 TLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGK-------CLKTLKGHSDFVFCCDFNPPSNL-IVSGSFDESVKIWEVKTGKCLKTL-----SAHSDPISAVNFN-CNGSLIVSGSYDGLCRIWDA-ASGQCLRTL-ADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTY 246 HSP 2 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 59/226 (26.11%), Postives = 104/226 (46.02%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGXVNTVKFFPDGNRF-GTGSDDGTCRLFDIRT 666 +TL GH+ ++ + W+S+ +R+VSAS D L VW+ + + +K +V C F+P + G D I+ + K G + LS H +S + + +++ S D C +WD +G LRT G V V S N + ++ + D+T +LWD R ++T+ GH E F G ++ +GS+D +++++T Sbjct: 75 KTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEV-----KTGK--CLKTLSAHSDPISAVNF-NCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEG------NPPVSFVKFS-PNGKYILTATLDNTLKLWDYS-RGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQT 284
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: NUDF_ASPOR (Nuclear distribution protein nudF homolog OS=Aspergillus oryzae GN=nudF PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14 Identity = 61/240 (25.42%), Postives = 100/240 (41.67%), Query Frame = 1 Query: 4 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI--------------------TSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFP---------DGNRFGTGSD 633 RTLQGH V ++ + RN +VSAS+D + +W+ T I WV + S G+ + G D ++++++ + N+ R + GH+ ++ CC + P + T S D T +WD T L T V GH + V ++ + + +S S D T R WD + V+T HE V ++++ P DG G G+D Sbjct: 196 RTLQGHDHIVSAVRFIPSRNLLVSASRDNDMRIWDVTTGYCVKTINGHTDWVRDVSISFDGRFLFSTGQDMTARLWDISTVS----NIEHKRTMLGHENFIECCAFAPPTSYQFLAPLAGLGKRPSSTNGADFMATGSRDNTIKIWDSRGTCLMTLV-------GHDSWVQAL-VFHPGGKYLLSVSDDKTLRCWDLNQQGKCVKTLDAHESFVTSLRWAPGVAKNVPGGDGAAEGEGND 423
BLAST of CF417476 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13 Identity = 67/215 (31.16%), Postives = 95/215 (44.19%), Query Frame = 1 Query: 10 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGXVNTVKFFPDGNRFGTGSDDGTCRLF 654 L GH V S+ +S +N I SAS+DG + +W + + FSP G+ A G D I++L DGNL + L GH+ V + PD + L ++S D+T LW +G +V G GHT V S + + VS D RLWD + +R F E V + P+GN +DDGT RL+ Sbjct: 556 LTGHRDGVTSVAISSHKNLIASASRDGTVHLWTP-QGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDL------DGNL--LQTLKGHQDSVYSVSFSPDGEI-LASTSRDRTVRLWHWRSGKTLAVLG-----GHTKSVDDAQFS-PDGQTLVSVCRDGQIRLWD--LDGNLIRQFGLPEVAFFGVNWHPNGNLLAVAADDGTVRLW 752 The following BLAST results are available for this feature:
BLAST of CF417476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 204
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417476 ID=CF417476; Name=CF417476; organism=Citrus sinensis; type=EST; length=728bpback to top |