CF417507

Overview
NameCF417507
Unique NameCF417507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 3.513e-93
Identity = 154/175 (88.00%), Postives = 164/175 (93.71%), Query Frame = 1
Query:   10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KS P+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR 174          

HSP 2 Score: 37.3502 bits (85), Expect = 3.513e-93
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  552 LVKDLTHFXPGGAFDPLGLADDPDQF 629
            L + L    PGGAFDPLGLA+DP+ F
Sbjct:  180 LGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.023e-86
Identity = 130/176 (73.86%), Postives = 149/176 (84.66%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            A +A+  +A AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 178          

HSP 2 Score: 72.7886 bits (177), Expect = 1.023e-86
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMF
Sbjct:  193 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 228          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.740e-86
Identity = 136/178 (76.40%), Postives = 145/178 (81.46%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T AI  +A AG            KVG    GRITMR+TV     +   S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 172          

HSP 2 Score: 72.0182 bits (175), Expect = 1.740e-86
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:  187 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 222          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 5.039e-86
Identity = 135/176 (76.70%), Postives = 150/176 (85.23%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KS P S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 175          

HSP 2 Score: 69.707 bits (169), Expect = 5.039e-86
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 2.482e-85
Identity = 133/178 (74.72%), Postives = 149/178 (83.71%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+  S FAG+ A++ S       G    GR+TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 71.2478 bits (173), Expect = 2.482e-85
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 227          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 3.238e-85
Identity = 132/178 (74.16%), Postives = 146/178 (82.02%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT AI  S+FAG+     S+       +   G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176          

HSP 2 Score: 71.2478 bits (173), Expect = 3.238e-85
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  191 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 226          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.224e-85
Identity = 132/176 (75.00%), Postives = 144/176 (81.82%), Query Frame = 1
Query:   10 MATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MATS A   S F+GQ  L+  NE  RKVG  +     M    K+   SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR
Sbjct:    1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 175          

HSP 2 Score: 72.0182 bits (175), Expect = 4.224e-85
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:  190 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 225          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.510e-85
Identity = 131/176 (74.43%), Postives = 147/176 (83.52%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+   +FAGQ A++ S       G    GR++MR+TV       S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 175          

HSP 2 Score: 69.707 bits (169), Expect = 5.510e-85
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.374e-85
Identity = 134/178 (75.28%), Postives = 151/178 (84.83%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+  S+FAG+ A++ S       G    G++TMR+TV K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 67.781 bits (164), Expect = 9.374e-85
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVK +KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMF 227          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.081e-84
Identity = 129/177 (72.88%), Postives = 145/177 (81.92%), Query Frame = 1
Query:   16 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            T A+  S+FAG+     S+       +   G++TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177          

HSP 2 Score: 69.707 bits (169), Expect = 2.081e-84
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 227          
The following BLAST results are available for this feature:
BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB21_SILPR3.513e-9388.00Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_PHYPA1.023e-8673.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE1.740e-8676.40Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_SOLLC5.039e-8676.70Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2G_SOLLC2.482e-8574.72Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_PETSP3.238e-8574.16Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_POLMU4.224e-8575.00Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_TOBAC5.510e-8574.43Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB25_TOBAC9.374e-8575.28Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_PETSP2.081e-8472.88Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-437 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bp
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAANTNGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTNACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAG
CTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTG
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