CF417507

Overview
NameCF417507
Unique NameCF417507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.243e-82
Identity = 127/178 (71.35%), Postives = 142/178 (79.78%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+  S FAG+      +       +   G+ TMR+T  K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVW KAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYR 177          

HSP 2 Score: 68.5514 bits (166), Expect = 3.243e-82
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+DP+ FAELKVKE KNGRLAMFSMF
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMF 227          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.518e-82
Identity = 127/182 (69.78%), Postives = 146/182 (80.22%), Query Frame = 1
Query:   10 MATSAIQQSAFAGQTALRQS---NEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            MA S+    A +  T   +    N   +++G A   R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR
Sbjct:    1 MAASSSSSMALSSPTLAGKQLKLNPSSQELGAA---RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 179          

HSP 2 Score: 72.0182 bits (175), Expect = 5.518e-82
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct:  194 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 229          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.225e-81
Identity = 130/179 (72.63%), Postives = 144/179 (80.45%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 175          

HSP 2 Score: 65.855 bits (159), Expect = 1.225e-81
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ F ELKVKELK GRLAM SMF
Sbjct:  190 PGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMF 225          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 1.225e-81
Identity = 130/178 (73.03%), Postives = 141/178 (79.21%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            AT A+   A AG+ A +   E          GRITMR++  K  P    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR
Sbjct:    4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR 171          

HSP 2 Score: 71.2478 bits (173), Expect = 1.225e-81
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  186 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 221          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.872e-81
Identity = 120/145 (82.76%), Postives = 130/145 (89.66%), Query Frame = 1
Query:  106 GRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSILAIWA QV+LMG VEGYR
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYR 155          

HSP 2 Score: 68.9366 bits (167), Expect = 7.872e-81
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPL LADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  170 PGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMF 205          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 3.874e-80
Identity = 120/147 (81.63%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  109 RITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR
Sbjct:   29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR 175          

HSP 2 Score: 72.4034 bits (176), Expect = 3.874e-80
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct:  190 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.600e-78
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 1
Query:  136 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 138          

HSP 2 Score: 67.0106 bits (162), Expect = 1.600e-78
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+ P+ FAELKVKELKNGRLAMFSMF
Sbjct:  153 PGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMF 188          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.624e-78
Identity = 122/177 (68.93%), Postives = 140/177 (79.10%), Query Frame = 1
Query:   16 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            T ++  S+FAG+      +  +  +G A   R+ MR+T     Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMG VEGYR
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYR 176          

HSP 2 Score: 65.855 bits (159), Expect = 4.624e-78
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLA+ P  FAELKVKE+KNGRLAMFSMF
Sbjct:  191 PGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMF 226          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.744e-74
Identity = 121/176 (68.75%), Postives = 137/176 (77.84%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYR
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR 166          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-74
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 3
Query:  579 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            PGG+FDPLGLADDP+  AELKVKELKNGRLAMFSMF
Sbjct:  181 PGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMF 216          
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.273e-74
Identity = 120/177 (67.80%), Postives = 131/177 (74.01%), Query Frame = 1
Query:   13 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 531
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGY 173          

HSP 2 Score: 67.781 bits (164), Expect = 2.273e-74
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 3
Query:  582 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686
            GG+FDPLGL DDP++FAELKVKE+KNGRLAMFSMF
Sbjct:  190 GGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMF 224          
The following BLAST results are available for this feature:
BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB22_PETSP3.243e-8271.35Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_PEA5.518e-8269.78Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_MAIZE1.225e-8172.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ1.225e-8173.03Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN7.872e-8182.76Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ3.874e-8081.63Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA1.600e-7885.71Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_WHEAT4.624e-7868.93Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN1.744e-7468.75Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE2.273e-7467.80Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-437 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bp
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAANTNGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTNACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAG
CTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTG
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