CF417534
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13 Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426 LQFP GR+ RFLK + RVGA A GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I+ LL K +KA + Sbjct: 37 LQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAYGGVLPHINRALLLKVEQKKKAKALE 143
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13 Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 106 LQFPVGRIARFLK---AGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393 LQFPVGRI R+LK AGK RVG+ A GNAA+D K RI PRH+QLA+R D+EL L+ TIA+GGV+P+I+ LL K Sbjct: 31 LQFPVGRIKRYLKKNAAGK--TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLK 126
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13 Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 396 LQFPVGRI R LK + RVGA A GNA++D K RI PRH+QLA+R DEEL L+ TIA GG +P+IH L+ KK Sbjct: 26 LQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGAIPHIHKSLIGKK 122
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13 Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 387 LQFPVGR+ RFLKA RVGA + GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I+ LL Sbjct: 33 LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAGGGVLPHINKQLL 126
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426 LQFP GR+ RFLK + RVGA A GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I+ LL K +KA + Sbjct: 36 LQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKAKAQE 142
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426 LQFP GR+ RFLK + RVGA A GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I+ LL K +KA + Sbjct: 36 LQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKAKAIE 142
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399 LQFPVGRI R LK A RVGA A GNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K + Sbjct: 38 LQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 135
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393 LQFPVGR+ R LK A RVGA A GNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393 LQFPVGRI R LK+ A RVGA A GNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K Sbjct: 39 LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13 Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1 Query: 106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399 +QFPVGRI R LK A RVGA A GNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ K T Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 134 The following BLAST results are available for this feature:
BLAST of CF417534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417534 ID=CF417534; Name=CF417534; organism=Citrus sinensis; type=EST; length=614bpback to top |