CF417534

Overview
NameCF417534
Unique NameCF417534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426
            LQFP GR+ RFLK     + RVGA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL K      +KA +
Sbjct:   37 LQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAYGGVLPHINRALLLKVEQKKKAKALE 143          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  106 LQFPVGRIARFLK---AGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393
            LQFPVGRI R+LK   AGK   RVG+ A                   GNAA+D K  RI PRH+QLA+R D+EL  L+   TIA+GGV+P+I+  LL K
Sbjct:   31 LQFPVGRIKRYLKKNAAGK--TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLK 126          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 396
            LQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GG +P+IH  L+ KK
Sbjct:   26 LQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGAIPHIHKSLIGKK 122          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 387
            LQFPVGR+ RFLKA      RVGA +                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL
Sbjct:   33 LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAGGGVLPHINKQLL 126          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426
            LQFP GR+ RFLK     + RVGA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL K      +KA +
Sbjct:   36 LQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKAKAQE 142          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAAD 426
            LQFP GR+ RFLK     + RVGA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL K      +KA +
Sbjct:   36 LQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKAKAIE 142          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGRI R LK    A  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct:   38 LQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 135          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393
            LQFPVGR+ R LK    A  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K
Sbjct:   35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393
            LQFPVGRI R LK+   A  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K
Sbjct:   39 LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            +QFPVGRI R LK    A  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K T
Sbjct:   37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 134          
The following BLAST results are available for this feature:
BLAST of CF417534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AZ_GIBZE1.828e-1344.44Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASHGO1.828e-1348.48Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AV_RABIT1.828e-1346.94Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AZ_SCHPO2.388e-1348.42Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AZ_NEUCR3.119e-1344.44Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S... [more]
H2AZ_CHAGB3.119e-1344.44Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ... [more]
H2AV3_ORYSJ3.119e-1347.47Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH3.119e-1347.42Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ3.119e-1348.45Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV1_ARATH3.119e-1347.47Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-464 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417534 ID=CF417534; Name=CF417534; organism=Citrus sinensis; type=EST; length=614bp
TTCCTTTCTTCGTTAAGAGCTTTTTCACTTGAGATGGCGGGTCGGGGCAA
GACTCTCGGGTCCGGGGCGGCGAAGAAGGCCACCTCACGTAGCAGCAAAG
CGGGGCTTCAATTTCCCGTCGGTCGTATTGCCAGGTTCCTGAAAGCCGGG
AAATATGCTGAACGGGTCGGTGCCGGAGCCCCGGTTTATCTCGCCGCCGT
CCTTGAATATCTCGCCGCTGAGGTTTTGGAATTAGCTGGAAATGCTGCAA
GGGACAACAAGAAAACACGAATTGTCCCTCGCCACATCCAATTGGCTGTC
AGGAATGATGAGGAGCTCAGCAAGCTTCTTGGGGATGTTACCATTGCTAA
CGGTGGTGTGATGCCCAACATCCACAACCTTCTCCTTCCCAAGAAGACTG
GAACTTCAGGGTCCAAGGCTGCTGATGAAGACAGTTAAATTCTCATCACT
AGAAGAGTCAAAGTGATATGATCAACACTCTTTGTGTTAATTGTGCTATG
TGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGTTTGNTGTTTTTGTGGN
TGTAGTTAGGATTTCAAATAGCTATGTTTGTGTATAATTTCTCTCAGTTG
CTTAATAGAAGAAG
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