CF417534

Overview
NameCF417534
Unique NameCF417534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 387
            LQFPVGRI R LK+      R+GA A                   GNA++D +  RI PRH+QLA+R DEEL  ++   TIA GGV+P+IH  L+
Sbjct:   32 LQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMV-RATIAGGGVLPHIHKTLI 125          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 49/108 (45.37%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL----PKKTGTSGS 414
            LQFP G + RFLK     + RVGA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P I+  LL     KK G S S
Sbjct:   32 LQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKGKSDS 138          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  106 LQFPVGRIARFLKA-GKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 393
            LQFP GRI R L+   +   R+GA A                   GNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I+  LL K
Sbjct:   32 LQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLK 127          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL--PKKTG 402
            L FPV RI + ++ G++ +R  + AP                     A    KTRI P+HI L++  D EL+ LL +VTIANGGV   IH +LL  PKK G
Sbjct:  139 LTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239          
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKT--RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 420
            L FPVGR+   L+ G+YA R+GA                       AA    K   R+ PR + LAVR+D++L  LL DVT++ GGVMP+++  L  K   +  ++A
Sbjct:   25 LIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARA 131          
The following BLAST results are available for this feature:
BLAST of CF417534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AZ_USTMA2.640e-1244.21Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASPTN4.503e-1245.37Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2AZ_PHANO7.681e-1245.36Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AV1_DICDI4.979e-1139.60Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A_TRYCR6.503e-1135.51Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-464 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417534 ID=CF417534; Name=CF417534; organism=Citrus sinensis; type=EST; length=614bp
TTCCTTTCTTCGTTAAGAGCTTTTTCACTTGAGATGGCGGGTCGGGGCAA
GACTCTCGGGTCCGGGGCGGCGAAGAAGGCCACCTCACGTAGCAGCAAAG
CGGGGCTTCAATTTCCCGTCGGTCGTATTGCCAGGTTCCTGAAAGCCGGG
AAATATGCTGAACGGGTCGGTGCCGGAGCCCCGGTTTATCTCGCCGCCGT
CCTTGAATATCTCGCCGCTGAGGTTTTGGAATTAGCTGGAAATGCTGCAA
GGGACAACAAGAAAACACGAATTGTCCCTCGCCACATCCAATTGGCTGTC
AGGAATGATGAGGAGCTCAGCAAGCTTCTTGGGGATGTTACCATTGCTAA
CGGTGGTGTGATGCCCAACATCCACAACCTTCTCCTTCCCAAGAAGACTG
GAACTTCAGGGTCCAAGGCTGCTGATGAAGACAGTTAAATTCTCATCACT
AGAAGAGTCAAAGTGATATGATCAACACTCTTTGTGTTAATTGTGCTATG
TGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGTTTGNTGTTTTTGTGGN
TGTAGTTAGGATTTCAAATAGCTATGTTTGTGTATAATTTCTCTCAGTTG
CTTAATAGAAGAAG
back to top