CF417534

Overview
NameCF417534
Unique NameCF417534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 429
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 429
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 429
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 420
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +KA
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKA 128
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.255e-30
Identity = 71/122 (58.20%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:   34 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.255e-30
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGS 414
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI ++LLPKKT ++ S
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAKS 126
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGRI R+LK GKYA+RVGAGAP                  GNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGV+PNIHN+LLPKK+
Sbjct:   24 LQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 70/125 (56.00%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:   34 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 408
            M+GRGK+                 LQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG S
Sbjct:    1 MSGRGKS--GKARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGKS 123
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 432
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG     ++
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQE 133
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 432
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG     ++
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQE 133
The following BLAST results are available for this feature:
BLAST of CF417534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A_ASPOR4.789e-3061.11Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]
H2A_ASPFU4.789e-3061.11Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL4.789e-3061.11Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A4_CHICK4.789e-3062.86Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A_ONCMY6.255e-3058.20Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A1_XENLA6.255e-3064.08Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_PLAFA8.169e-3066.33Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_PARLI8.169e-3056.00Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_ASPNG8.169e-3059.63Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC8.169e-3059.63Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-464 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417534 ID=CF417534; Name=CF417534; organism=Citrus sinensis; type=EST; length=614bp
TTCCTTTCTTCGTTAAGAGCTTTTTCACTTGAGATGGCGGGTCGGGGCAA
GACTCTCGGGTCCGGGGCGGCGAAGAAGGCCACCTCACGTAGCAGCAAAG
CGGGGCTTCAATTTCCCGTCGGTCGTATTGCCAGGTTCCTGAAAGCCGGG
AAATATGCTGAACGGGTCGGTGCCGGAGCCCCGGTTTATCTCGCCGCCGT
CCTTGAATATCTCGCCGCTGAGGTTTTGGAATTAGCTGGAAATGCTGCAA
GGGACAACAAGAAAACACGAATTGTCCCTCGCCACATCCAATTGGCTGTC
AGGAATGATGAGGAGCTCAGCAAGCTTCTTGGGGATGTTACCATTGCTAA
CGGTGGTGTGATGCCCAACATCCACAACCTTCTCCTTCCCAAGAAGACTG
GAACTTCAGGGTCCAAGGCTGCTGATGAAGACAGTTAAATTCTCATCACT
AGAAGAGTCAAAGTGATATGATCAACACTCTTTGTGTTAATTGTGCTATG
TGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGTTTGNTGTTTTTGTGGN
TGTAGTTAGGATTTCAAATAGCTATGTTTGTGTATAATTTCTCTCAGTTG
CTTAATAGAAGAAG
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