CF417534

Overview
NameCF417534
Unique NameCF417534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_ASPTN (Histone H2A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hta1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.915e-29
Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.915e-29
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ RFLK G Y  RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.915e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKKTRIVPRH+QLA+RNDEEL+KLL  VTIA GGV+PNI  +LLPKKT
Sbjct:   23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CF417534 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.032e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  106 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 399
            LQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CF417534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A_ASPTN6.915e-2964.29Histone H2A OS=Aspergillus terreus (strain NIH 262... [more]
H2A1_PSAMI6.915e-2965.31Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A1D_HUMAN6.915e-2964.29Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A_LITVA9.032e-2966.33Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A3_RAT9.032e-2964.29Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE9.032e-2964.29Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN9.032e-2964.29Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]
H2A1_MOUSE9.032e-2964.29Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1H_MOUSE9.032e-2964.29Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE9.032e-2964.29Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-464 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417534 ID=CF417534; Name=CF417534; organism=Citrus sinensis; type=EST; length=614bp
TTCCTTTCTTCGTTAAGAGCTTTTTCACTTGAGATGGCGGGTCGGGGCAA
GACTCTCGGGTCCGGGGCGGCGAAGAAGGCCACCTCACGTAGCAGCAAAG
CGGGGCTTCAATTTCCCGTCGGTCGTATTGCCAGGTTCCTGAAAGCCGGG
AAATATGCTGAACGGGTCGGTGCCGGAGCCCCGGTTTATCTCGCCGCCGT
CCTTGAATATCTCGCCGCTGAGGTTTTGGAATTAGCTGGAAATGCTGCAA
GGGACAACAAGAAAACACGAATTGTCCCTCGCCACATCCAATTGGCTGTC
AGGAATGATGAGGAGCTCAGCAAGCTTCTTGGGGATGTTACCATTGCTAA
CGGTGGTGTGATGCCCAACATCCACAACCTTCTCCTTCCCAAGAAGACTG
GAACTTCAGGGTCCAAGGCTGCTGATGAAGACAGTTAAATTCTCATCACT
AGAAGAGTCAAAGTGATATGATCAACACTCTTTGTGTTAATTGTGCTATG
TGACATTTGCCTTTTTAGTGTTTGTTTAGTTAGTTTGNTGTTTTTGTGGN
TGTAGTTAGGATTTCAAATAGCTATGTTTGTGTATAATTTCTCTCAGTTG
CTTAATAGAAGAAG
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