CF417551

Overview
NameCF417551
Unique NameCF417551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 48/205 (23.41%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   54 QCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 668
            + ++L  R  +N  R       R+ + ++ G  LATV+  +      +Q R S   F  + + +    G P+F+++  +F RE  +  Y  +++V  ++   LP+L  +S+   A  ++  GL+ G   FIY+++++FA      S +  V+ ++PN                    F+ +  D  H +W + ++YI+  KY Y+
Sbjct:  357 ETVILAKRYMINWTRTPELIGTRVFIVMMTGFLLATVYWKVDDSPRGVQERLSFFSFAMATMFYSCADGLPAFIQERYIFLRETAHNAYRRSSYVISHSLVTLPHLFALSIGFAATTFWFVGLNGGLAGFIYYLMIIFASFWSGCSFVTFVSGVIPNVMMSYMVTFGYLSYCLLFSGFY-VNRDRIHLYWIW-IHYISLLKYPYE 559          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.346e-14
Identity = 53/208 (25.48%), Postives = 90/208 (43.27%), Query Frame = 3
Query:   45 FLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 668
            F  +  VL  RS  N  R    +  RLG  ++ G  LAT+F  L      +Q R     F  S   +      P F+++  +F RE     Y  +++V  ++  ALP L ++SL   AI ++  GL  G   F+++ L++ A      S +  ++ +VP+                    FF   + +P  +W +  +YI+  KY Y+
Sbjct:  419 FWVELAVLAKRSMTNSRRQPELFGIRLGAVLVTGFILATMFWQLDNSPKGVQERLGCFAFAMSTTFYTCADALPVFLQERFIFMRETAYNAYRRSSYVLSHSLVALPSLIILSLAFAAITFWGVGLDGGLMGFLFYFLVILASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIP-GYWIW-FHYISLVKYPYE 624          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 53/219 (24.20%), Postives = 101/219 (46.12%), Query Frame = 3
Query:   15 ALEKKSTHAD-FLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 668
            ++E  S++A+  L +  +L  R   N  R       R+   ++ G  LATV+  L       Q R +L  FV   + +  +   P F+++  +F RE  +  Y  +++V  ++  +LP L   SL+  AI ++  GL  G + F+++ LL++A      S++  ++ +VPN                    F+   + +P  +W +  +YI+  KY Y+
Sbjct:  406 SMETVSSYANPSLFETFILAKRYMKNWIRMPELVGTRIATVMVTGCLLATVYWKLDHTPRGAQERLTLFAFVVPTMFYCCLDNVPVFIQERYIFLRETTHNAYRTSSYVISHSLVSLPQLLAPSLVFSAITFWTVGLSGGLEGFVFYCLLIYASFWSGSSVVTFISGVVPNIMLCYMVSITYLAYCLLLSGFYVNRDRIPF-YWTW-FHYISILKYPYE 622          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 51/219 (23.29%), Postives = 97/219 (44.29%), Query Frame = 3
Query:   15 ALEKKSTHADF-LTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 668
            ++E  S++A+  L +  +L  R   N  R       R+G  ++ G+ LATV+  L       Q R     F  S + +      P F+++  +F RE  +  Y  +++V  +   +LP L  +S+   A  ++  GL  G + F Y+ L+++A      S++  ++ L+PN                    F+   + +P  +W +  +YI+  KY Y+
Sbjct:  389 SMETVSSYANPPLAETFILAKRYIKNWIRTPELIGMRIGTVMVTGLLLATVYWRLDNTPRGAQERMGFFAFGMSTMFYCCADNIPVFIQERYIFLRETTHNAYRTSSYVISHALVSLPQLLALSIAFAATTFWTVGLSGGLESFFYYCLIIYAAFWSGSSIVTFISGLIPNVMMSYMVTIAYLSYCLLLGGFYINRDRIP-LYWIW-FHYISLLKYPYE 605          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   12 GALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTD-DNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFS-ALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNY 527
            G +E+ +T   F TQ  V+  RS +N  R+         V++ +G+ L  +F  L  + +   Q R   + F+ + L+F +I     F  D  +F RER NG Y  +A+      +  +P   +  +I G+I YY+ GL  G  HFIYF++ L     +  S+ M ++++ P +
Sbjct:  873 GKVEEYAT--SFWTQFFVVCRRSLLNYMRNPFLLRTTYFVHIFVGLTLGYLFWKLPANLEPGCQNRFGAMFFMTALLSFGSITSLDLFYNDRIIFIRERANGFYRTSAYFLAKVVTDIIPMRVIPPIILGSICYYMIGLRPGILHFIYFLISLVLTSTVASSMCMAISTISPTF 1044          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 50/208 (24.04%), Postives = 87/208 (41.83%), Query Frame = 3
Query:   45 FLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 668
            F  + IV+  R+ +N  R       RLG  ++ GI LAT+F+NL       Q R     F  S   +      P F+++  +F RE     Y  +++V   +  ++P L ++S    A  ++  GL  G   F +F   + A      S +  ++ ++PN                    FF   + +P  +W +  +YI+  KY Y+
Sbjct:  447 FWIEMIVIGKRAILNSRRQPELLGMRLGAVMVTGIILATMFTNLDNSPKGAQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSQSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTILASFWAGSSFVTFLSGVIPNVMLGFTVVVAILAYFLLFSGFFISRDRIP-VYWLW-FHYISLVKYPYE 652          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 3
Query:    9 SGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFS-ALPYLALISLIPGAIVYYLPGLHKGYQHFI--YFVLLLFACMLLVESL 494
            +G L      A FL Q  +L SRSF NMYR+         + +LL + L T++ N+  D +  Q R  L  F+ +Y  F+T  G  SF  +  +F +ER N +Y   A+      S  +P   +  ++   IVY + GL+     F     +L+LF   + +E L
Sbjct:  761 NGDLPTGQQSAGFLQQLSILNSRSFKNMYRNPKLLLGNYLLTILLSLFLGTLYYNVSNDISGFQNRMGLFFFILTYFGFVTFTGLSSFALERIIFIKERSNNYYSPLAYYISKIMSEVVPLRVVPPILLSLIVYPMTGLNMKDNAFFKCIGILILFNLGISLEIL 925          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 56/229 (24.45%), Postives = 94/229 (41.05%), Query Frame = 3
Query:    9 SGALEKKSTHADFL----TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYXXXXXXXXXXXXXXXXXXXFFRLPNDLPHPFWKYPLYYIAFH-----KYAYQ 668
            SGA   +S+   F     T+ +V+  RS +N  R    +  RLG  ++ G+ LAT+F  L      IQ R     F  S   +      P F+++  +F RE     Y  +++V  +T  ++P L ++S    A  +   GL  G + F++F   +        S +  ++ +V +                    FF +  D      + PLY+I FH     KY Y+
Sbjct:  415 SGATNLRSSFQTFANPFWTEMLVIGKRSILNSRRQPELFGIRLGAVLVTGMILATIFWKLDNSPRGIQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVGLAGGSEGFLFFFFTILTAFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFF-ISRD------RIPLYWIWFHYLSLVKYPYE 636          
BLAST of CF417551 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 48/165 (29.09%), Postives = 76/165 (46.06%), Query Frame = 3
Query:   45 FLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDDNSIQ----ARGSLLMFVASYLTFMTIGGF-PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPN 524
            F+TQC+    +   + +R+  Y   RL   +++ +   T+F NLGT     Q    A GS+   V  Y+     G   P  V +  VF RER  G Y A  + FG     LPY+ + +LI G +VY + G       F++++  ++  +L      M+   L PN
Sbjct: 1175 FITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVL-YIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPN 1338          
The following BLAST results are available for this feature:
BLAST of CF417551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AB17G_ARATH5.134e-1523.41ABC transporter G family member 17 OS=Arabidopsis ... [more]
AB6G_ARATH4.346e-1425.48ABC transporter G family member 6 OS=Arabidopsis t... [more]
AB19G_ARATH5.677e-1424.20ABC transporter G family member 19 OS=Arabidopsis ... [more]
AB18G_ARATH7.414e-1423.29ABC transporter G family member 18 OS=Arabidopsis ... [more]
ABCGO_DICDI9.683e-1428.74ABC transporter G family member 24 OS=Dictyosteliu... [more]
AB2G_ARATH6.276e-1324.04ABC transporter G family member 2 OS=Arabidopsis t... [more]
ADP1_YEAST2.385e-1230.30Probable ATP-dependent permease OS=Saccharomyces c... [more]
AB20G_ARATH3.115e-1224.45ABC transporter G family member 20 OS=Arabidopsis ... [more]
PDR4_ORYSJ2.637e-1129.09Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-481 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417551 ID=CF417551; Name=CF417551; organism=Citrus sinensis; type=EST; length=668bp
CACAGGATTCTGGAGCTCTGGAGAAAAAGAGTACCCATGCTGACTTTCTC
ACTCAATGCATAGTTCTCACAAGCAGATCTTTTGTGAACATGTATCGTGA
TCTAGGTTACTACTGGTTTCGCCTAGGTGTTTATGTCTTATTGGGAATAG
GTCTTGCGACTGTATTTAGCAATCTTGGGACTGACGATAATTCAATTCAG
GCAAGAGGTTCGCTACTCATGTTTGTAGCTTCATATCTAACCTTCATGAC
CATTGGTGGATTCCCTTCTTTTGTTGAGGACATGAAGGTATTTGAGCGAG
AGAGACTAAACGGGCACTACGGTGCCACTGCGTTTGTGTTTGGCAACACA
TTTTCTGCGCTGCCATACTTAGCTCTCATTTCATTGATTCCTGGAGCGAT
AGTTTATTACCTTCCGGGACTTCACAAAGGATATCAACACTTCATATACT
TTGTTTTGTTATTGTTTGCTTGCATGTTGCTCGTCGAGAGCCTAATGATG
ATCGTTGCAAGCTTGGTGCCCAATTATCTGACGGGCATAATAACAGGAGC
TGGAATTCNAGGNCTTATGATATTAGGCGGCGGATTTTTTCGATTGCCAA
ATGATCTTCCTCATCCATTTTGGAAATACCCATTATATTATATTGCTTTC
CATAAATATGCGTACCAG
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