CF417556

Overview
NameCF417556
Unique NameCF417556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417556 vs. ExPASy Swiss-Prot
Match: CSLC8_ARATH (Probable xyloglucan glycosyltransferase 8 OS=Arabidopsis thaliana GN=CSLC8 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.346e-71
Identity = 123/235 (52.34%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    4 RWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQNSDIALVQARWRFVNSDECLLTRMQEMSLDYHFKVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIIRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFSFYCVVLPLTI 708
            +W+ KG+NI Y+ R  RTGYKAG LK  +   YV+  E+VAIFDADF+P  D+L+  +P+  +  ++ LVQARW FVN DE LLTR+Q ++L +HF+VEQ+V      FFGFNGTAGVWRI A+ E+GGW +RTTVEDMD+AVRA L GWKF+YL D++V  E+P +++A++ QQHRW  GP  LFR + +  I   K+  WKK  +I  FF +RK+I    +F+ +CV+LP+T+
Sbjct:  282 KWSQKGVNIIYRHRLVRTGYKAGNLKSAMSCDYVEAYEFVAIFDADFQPNSDFLKLTVPHFKEKPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIYLNDVKVLCEVPESYEAYKKQQHRWHSGPMQLFR-LCLRSILTSKIAMWKKANLILLFFLLRKLILPFYSFTLFCVILPITM 515          
BLAST of CF417556 vs. ExPASy Swiss-Prot
Match: CSLC6_ARATH (Probable xyloglucan glycosyltransferase 6 OS=Arabidopsis thaliana GN=CSLC6 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.679e-70
Identity = 124/236 (52.54%), Postives = 169/236 (71.61%), Query Frame = 1
Query:    1 QRWAAKGINIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQNSDIALVQARWRFVNSDECLLTRMQEMSLDYHFKVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIIRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFSFYCVVLPLTI 708
            Q+W  +G+ I Y+ R  RTGYKAG LK  +   YVK  E+VAIFDADF+P  D+L++ +P+   N ++ALVQ RW FVN DE LLTR+Q ++L +HF+VEQ+V      FFGFNGTAGVWRI A+ + GGW +RTTVEDMD+AVRA L GWKF+YL D++   ELP +++A++ QQ+RW  GP  LFR    +I+R+ KV   KK  +I+ FF +RK+I    +F+ +CV+LPLT+
Sbjct:  275 QKWQQRGVRIVYRHRLIRTGYKAGNLKAAMNCEYVKDYEFVAIFDADFQPPADFLKKTVPHFKGNEELALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQYRWHSGPMQLFRLCFFDILRS-KVSAAKKANMIFLFFLLRKLILPFYSFTLFCVILPLTM 509          
BLAST of CF417556 vs. ExPASy Swiss-Prot
Match: BCSA_XANAC (Cellulose synthase catalytic subunit [UDP-forming] OS=Xanthomonas axonopodis pv. citri GN=bcsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 55/194 (28.35%), Postives = 82/194 (42.27%), Query Frame = 1
Query:   22 INIRYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDYLRRAIPYLVQNSDIALVQARWRFVNSDECLLTRMQEMSLDYHFKVEQEVGSATHAFFG-------------FNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFR 564
            + I Y  R N    KAG +   LK+      +YVAIFD D  P   +L+ A+ + + ++ +ALVQ    F + D        E +LD H KV  E       F+G             F G+  V +  A+ E GG    T  ED   A++   +G++  YL   Q       +      Q+ RW+ G A + R
Sbjct:  206 VGINYVTRTNNAHAKAGNINAALKKC---SGDYVAIFDCDHIPTRSFLQVAMGWFLHDTKLALVQMPHYFFSPDPF------ERNLDTHGKVPNE----GELFYGLLQDGNDQWNATFFCGSCAVIKRTALEEVGGVAVETVTEDAHTALKLQRRGYRTAYLAVPQAAGLATESLSGHVAQRIRWARGMAQIAR 386          
The following BLAST results are available for this feature:
BLAST of CF417556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CSLC8_ARATH4.346e-7152.34Probable xyloglucan glycosyltransferase 8 OS=Arabi... [more]
CSLC6_ARATH3.679e-7052.54Probable xyloglucan glycosyltransferase 6 OS=Arabi... [more]
BCSA_XANAC8.621e-1128.35Cellulose synthase catalytic subunit [UDP-forming]... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-486 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417556 ID=CF417556; Name=CF417556; organism=Citrus sinensis; type=EST; length=711bp
CAAAGATGGGCGGCCAAAGGCATTAACATAAGGTACCAAATCAGAGAGAA
TCGCACGGGATACAAAGCTGGTGCTCTCAAAGAAGGGCTCAAAAGAAGCT
ATGTTAAACATTGTGAATACGTGGCCATTTTCGACGCCGATTTCCGGCCG
GAGCCCGATTATCTCCGACGTGCCATTCCTTACTTAGTCCAAAACTCTGA
CATTGCCCTTGTTCAAGCTCGCTGGAGATTCGTAAATTCAGATGAATGCT
TGTTGACAAGAATGCAAGAGATGTCATTGGATTACCATTTTAAAGTGGAG
CAAGAAGTGGGATCAGCAACTCATGCTTTCTTTGGCTTCAATGGAACTGC
TGGTGTATGGAGAATTGCTGCTATCAATGAGGCAGGTGGCTGGAAGGATC
GAACTACAGTGGAGGACATGGACCTTGCTGTTCGAGCTAGTCTCAAGGGA
TGGAAATTTGTGTACCTCGGTGATCTCCAGGTGAAAAGTGAACTTCCTAG
TACTTTCAAAGCTTTCCGATTCCAGCAGCACCGATGGTCTTGTGGTCCTG
CCAATTTATTCAGGAAAATGGTGATGGAGATTATTAGAAATAAGAAAGTT
AAATTCTGGAAGAAAGTTTATGTTATCTACAGTTTCTTCTTTGTCCGGAA
GATAATTGCCCATATGGTCACATTTTCCTTCTATTGCGTCGTGCTTCCGC
TAACCATTCTG
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