CF417583

Overview
NameCF417583
Unique NameCF417583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSS SF GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.436e-16
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSSS F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.655e-16
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            M  STMALSS SF G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.997e-16
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 3
Query:   36 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            A S+MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFS
Sbjct:    3 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFS 60          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.306e-15
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPFS 215
            MA+STMALSS S  GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGPFS
Sbjct:    1 MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.227e-15
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFS 215
            MA STMALSS +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFS
Sbjct:    1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.909e-15
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSSS F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFS
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.799e-15
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMA+SSS F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.799e-15
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA STMALSS +  GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFS
Sbjct:    1 MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFS 61          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.480e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA STMALSS +F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFS
Sbjct:    1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFS 62          
The following BLAST results are available for this feature:
BLAST of CF417583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CB25_PETSP2.014e-1667.19Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP3.436e-1668.75Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB27_TOBAC7.655e-1667.19Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN9.997e-1672.13Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2A_SPIOL1.306e-1567.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH2.227e-1566.67Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_PETSP2.909e-1564.06Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB24_PETSP3.799e-1565.63Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_APIGR3.799e-1569.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL6.480e-1564.52Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-513 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417583 ID=CF417583; Name=CF417583; organism=Citrus sinensis; type=EST; length=217bp
TAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCTCGACCATG
GCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGG
CAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCA
AGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTAC
TTGGGTCCATTCTCTGG
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