CF417583

Overview
NameCF417583
Unique NameCF417583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFS 215
            MA STMALSS +F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFS
Sbjct:    1 MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.357e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   63 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            +  G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFS
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFS 52          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.644e-13
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSSS F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFS 61          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.706e-12
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFS 215
            MA+STMALSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP S
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLS 62          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.548e-11
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA S+MALSS +  GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAASSMALSSPTLTGKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFS 65          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.328e-11
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 3
Query:   36 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFS 215
            ++S+MALSS +  GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGPFS
Sbjct:    5 SSSSMALSSPTLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFS 66          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.328e-11
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 3
Query:  120 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGPFS
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFS 42          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.347e-11
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFS 215
            MA+STMALSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP S
Sbjct:    1 MASSTMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLS 62          
The following BLAST results are available for this feature:
BLAST of CF417583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CB22_ARATH1.105e-1465.08Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_CUCSA9.357e-1464.71Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_HORVU4.644e-1362.90Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE6.706e-1261.54Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA2.548e-1162.12Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA3.328e-1160.32Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_SOYBN3.328e-1190.63Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_MAIZE4.347e-1158.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-513 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417583 ID=CF417583; Name=CF417583; organism=Citrus sinensis; type=EST; length=217bp
TAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCTCGACCATG
GCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGG
CAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCA
AGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTAC
TTGGGTCCATTCTCTGG
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