CF417587

Overview
NameCF417587
Unique NameCF417587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417587 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = 1 
Query:  169 HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVLALLKH-*TLCPLPT 711
            +K   FL +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL   K    + P+PT
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPT 217
The following BLAST results are available for this feature:
BLAST of CF417587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH1.018e-1130.48Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-517 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417587 ID=CF417587; Name=CF417587; organism=Citrus sinensis; type=EST; length=713bp
AGTCAAGTCACAACTCACAATAACAAGCGAGGGAAGGAAGACCCAAAGAT
GGCAGGCATCAAGGTCCACGGTTCTGTTTTCTCAACTGCTACGCAGCGAG
TTTTCGCATCCCTCTACGAGAAGGAGCTCGAATACGAGCTTGTTCCCGTA
GACATGAAGGCTGGTGAACACAAAAAGGAGGCCTTCCTTTCTTTGAATCC
ATTCGGTCAAGTTCCGGTGCTTGAACACGGCGACCAGAAGCTCTTCGAAT
CAAGGGCAATCACCCAATACATCGCCCAGGAGTTTCCAGACAAAGGCACC
CAGTTAACATGCCCAGGCAAGCCCATCGCCCCGTTATTGGTATGGAAGGA
GGTGGAGGCACTCCAGTTCGACCCCCCATCATCGAAGCTCAACTGGGAGC
TCGTGTACAAGCCAATGTTTGGAATGACCACTGATCCAGCTGCGGTTGAA
GAAAATGAAGCTAAGCTTGCCAAAATTTTAGATGTTTACGAGGCCCGTTT
GTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCACCTTGGTCGATTTGC
ATCATCTCCCCAATATTAATTTGTTGTTGGGGACGCCTGTCAAGAAGCTG
TTTGATGCACGCCCCCATGTTAGCGCATGGGCAGCTGATATCACTTCCAG
ACCGGCTTGGGCTAAGGTCCTTGCCTTGCTCAAACACTGAACACTCTGCC
CGCTACCTACTAA
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