CF417592

Overview
NameCF417592
Unique NameCF417592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.434e-47
Identity = 85/142 (59.86%), Postives = 116/142 (81.69%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            D+GAS TFP Q   +RKNG++++KGRPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   13 DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.434e-47
Identity = 85/142 (59.86%), Postives = 116/142 (81.69%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            D+GAS TFP Q   +RKNG++++KGRPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   13 DSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 86/143 (60.14%), Postives = 115/143 (80.42%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 446
            +AGAS TFP Q   +RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GFE GKDL+++V  AMGEE   A +D
Sbjct:   13 EAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 84/143 (58.74%), Postives = 115/143 (80.42%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 446
            +AGAS TFP Q   +RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GF+ G+DL+++V  AMGEE   A +D
Sbjct:   13 EAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.714e-43
Identity = 85/142 (59.86%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F + +D+ +SV  AM EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.923e-43
Identity = 82/144 (56.94%), Postives = 115/144 (79.86%), Query Frame = 3
Query:   15 ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 446
            ADAGA+ TFP Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   10 ADAGAALTFPMQCSALRKNGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.818e-43
Identity = 83/144 (57.64%), Postives = 112/144 (77.78%), Query Frame = 3
Query:   15 ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 446
            ADAGAS T+P Q   +RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIF GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  E L   ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   11 ADAGASATYPMQCSALRKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDLMVTIISAMGEEAAISFKE 152          
The following BLAST results are available for this feature:
BLAST of CF417592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IF5A_SPOFR7.434e-4759.86Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX7.434e-4759.86Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO4.079e-4560.14Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_PONAB6.958e-4561.27Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE6.958e-4561.27Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN6.958e-4561.27Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A1_SCHPO1.187e-4458.74Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_CHICK1.714e-4359.86Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A_CANAL2.923e-4356.94Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A1_YEAST3.818e-4357.64Eukaryotic translation initiation factor 5A-1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-522 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417592 ID=CF417592; Name=CF417592; organism=Citrus sinensis; type=EST; length=618bp
ACTTTGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAG
GCCGGAACCATCCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTG
CAAGGTTGTTGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTA
AGTGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGAT
ATTGTTCCCTCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGA
CTACCAGCTGATTGATATCTCTGAGGATGGATTTGTTAGCCTGCTGACTG
AGAATGGCAATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTG
CTTTCACAGATCAAGGATGGATTTGAGAGTGGGAAAGATCTGGTTGTCTC
AGTTCAGTGTGCTATGGGAGAGGAGCAGATCAATGCCCTGAAGGACATTG
GCCCCAAGTAAAAGACTTTTGCTTGATCGAGAATGCAGATTGCTGAAAGC
TGTGGGAAGAAGTTGTATCCGCCAACGTGACTGTATATACACTTCGAAGC
ACCTTTTGGTTGTTTCAAACATGCAATTTACAGCTTCGTGGTATCACCTC
GCATTTCAATCTTTTTCG
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