CF417592

Overview
NameCF417592
Unique NameCF417592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.111e-42
Identity = 82/142 (57.75%), Postives = 112/142 (78.87%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++SG++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.895e-42
Identity = 82/142 (57.75%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIF+ KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q++  F+SGKDL+ +V  A GEE + A+K
Sbjct:   12 DSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.475e-42
Identity = 82/144 (56.94%), Postives = 110/144 (76.39%), Query Frame = 3
Query:   15 ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 446
            ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  E L   ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   11 ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGE-LGDSLQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 4.221e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.221e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.221e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 4.221e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.025e-40
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 443
            DAGAS TFP Q   +RKNG++V+KG PCK+VE+S SKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.501e-39
Identity = 83/147 (56.46%), Postives = 102/147 (69.39%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 458
            DAGAS T+P Q   +RK G++VIK RPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +I+   E GKD  V VQ AMGEE    +K+   K
Sbjct:   18 DAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CF417592 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 76/126 (60.32%), Postives = 100/126 (79.37%), Query Frame = 3
Query:   18 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLV 395
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +I+  ++ G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CF417592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IF5A1_RABIT1.111e-4257.75Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A_DROME1.895e-4257.75Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A2_YEAST2.475e-4256.94Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_RAT4.221e-4257.04Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE4.221e-4257.04Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN4.221e-4257.04Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN4.221e-4257.04Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5AL_HUMAN3.025e-4055.63Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A_NEUCR1.501e-3956.46Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A1_CHICK1.961e-3960.32Eukaryotic translation initiation factor 5A-1 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-522 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417592 ID=CF417592; Name=CF417592; organism=Citrus sinensis; type=EST; length=618bp
ACTTTGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAG
GCCGGAACCATCCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTG
CAAGGTTGTTGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTA
AGTGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGAT
ATTGTTCCCTCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGA
CTACCAGCTGATTGATATCTCTGAGGATGGATTTGTTAGCCTGCTGACTG
AGAATGGCAATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTG
CTTTCACAGATCAAGGATGGATTTGAGAGTGGGAAAGATCTGGTTGTCTC
AGTTCAGTGTGCTATGGGAGAGGAGCAGATCAATGCCCTGAAGGACATTG
GCCCCAAGTAAAAGACTTTTGCTTGATCGAGAATGCAGATTGCTGAAAGC
TGTGGGAAGAAGTTGTATCCGCCAACGTGACTGTATATACACTTCGAAGC
ACCTTTTGGTTGTTTCAAACATGCAATTTACAGCTTCGTGGTATCACCTC
GCATTTCAATCTTTTTCG
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