CF417593

Overview
NameCF417593
Unique NameCF417593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length205
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.486e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSN 201
            G VYKG   +GT VAVKR  + S QG+ EF  E+  ++ L H+NLV ++G+  E  E++LVYE++ N
Sbjct:  348 GDVYKGTFSNGTEVAVKRLSKTSEQGDTEFKNEVVVVANLRHKNLVRILGFSIEREERILVYEYVEN 414          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSL-------------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G VY G L DGT +AVK   + S              Q  KEF  E + L  +HHRNL S VGYCD+     L+YE+M+NG
Sbjct:  579 GIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANG 659          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 28/68 (41.18%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G+V+K +L DGT+ A+KRA+  + +G  + L E++ L +++HR+LV L+G C +    +L+YEF+ NG
Sbjct:  375 GEVFKAVLEDGTITAIKRAKLNNTKGTDQILNEVRILCQVNHRSLVRLLGCCVDLELPLLIYEFIPNG 442          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 GKVYKGIL--PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G V++G L  P    +AVK+    S+QG +EF+ EI+ L RL H+NLV+L G+C ++ + +L+Y+++ NG
Sbjct:  373 GTVFRGNLSSPSSDQIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNG 442          
The following BLAST results are available for this feature:
BLAST of CF417593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
CRK7_ARATH7.486e-1146.27Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]
Y4291_ARATH9.777e-1143.21Probable LRR receptor-like serine/threonine-protei... [more]
WAKLQ_ARATH9.777e-1141.18Wall-associated receptor kinase-like 20 OS=Arabido... [more]
LRKA2_ARATH9.777e-1141.43Lectin-domain containing receptor kinase A4.2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-523 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417593 ID=CF417593; Name=CF417593; organism=Citrus sinensis; type=EST; length=205bp
GGAAAGGTTTATAAAGGCATTCTTCCTGATGGCACGGTTGTTGCTGTGAA
GCGTGCCCAAGAGGGATCTTTGCAGGGAGAGAAGGAGTTCTTAACAGAAA
TACAATTTTTGTCAAGATTACATCATCGGAACCTTGTATCTTTGGTTGGA
TACTGTGATGAAGAAGGGGAACAGATGTTGGTGTATGAGTTTATGTCAAA
TGGGC
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