CF417601

Overview
NameCF417601
Unique NameCF417601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    9 GSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 227
            GSH    +++   +KL+D L   E+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRAVEKC
Sbjct:  166 GSH----QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKC 231          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   27 GREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            G++ LSES+ KD     E+VLTYEDKDGDWMLVGDVPWEMF  +C+RLRIMK +DAIGLAPRAV+K
Sbjct:  192 GKDGLSESR-KD----GEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDK 252          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVE 221
            ++ SH  + +    E KL D ++G+E+V TYEDKDGDWMLVGDVPW+MF+ TC+RLR+MKS++A+ LAPRA +
Sbjct:  127 KFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.309e-18
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 215
            ++ SH  + +    E KL D + G+E+V TYEDKDGDWMLVGDVPW+MF+ TC+RLR+MKS++A+ LAPR+
Sbjct:  141 KFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 3
Query:   78 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            E+VLTYEDKDGDWMLVGDVPWEMF  +C+RLRIMK +DAIGLAPRA EK
Sbjct:  210 EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEK 258          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3
Query:    6 YGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            +G+  A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++AIGLAPRA +K
Sbjct:  166 FGTFTATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3
Query:    6 YGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            +G+  A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++AIGLAPRA +K
Sbjct:  166 FGTFTATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 37/55 (67.27%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   48 SKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 212
            +KL DL+ G+E+V TYEDKDGDWMLVGDVPW+MF+ +CKR+R+MKS++A+ L+PR
Sbjct:  135 TKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   12 SHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            SH    R+ L++    D L   E+VLTYEDKD DWMLVGD+PW++F  +C++LRIM+ +DA G+APR++E+
Sbjct:  206 SHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            Q G   +  R+ L+     D L   E+VLTYEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  193 QSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
The following BLAST results are available for this feature:
BLAST of CF417601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA11_ORYSJ1.446e-2067.12Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA17_ORYSJ7.177e-2072.73Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA1_ORYSJ2.727e-1957.53Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ2.309e-1857.75Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA3_ORYSJ3.938e-1883.67Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA13_ORYSJ8.773e-1858.90Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI8.773e-1858.90Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA23_ORYSJ1.955e-1767.27Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA19_ORYSJ4.354e-1752.11Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ2.161e-1648.65Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-531 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417601 ID=CF417601; Name=CF417601; organism=Citrus sinensis; type=EST; length=681bp
GGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGC
AAGTTGAAGGATCTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGA
CAAAGATGGGGATTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTA
TTGGTACATGCAAGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGC
CTAGCGCCAAGGGCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTT
CAACATATTGTTGGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGC
AGATGACAGAAAATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGG
GCATCTGCTTTTCTGTGTTACCACATTACTACGTTTACTGTGATGGATTT
TCATGTTCTGTAAGCTGTGATTGTTGTCCTGTTATTAAAATTATAAAACT
CTCGTAGACCTTGTATTTTGGAGTGAACCTCTGAGATTGGATCTCCTCAA
GGAGTTCTGACAAGTTCCTGTTCCCAACAGGTGCCTTAGTTTGTAAAGTG
CGTTGTTTGTTGAACTACTTTGTTATGCGTGCTTGTATGGTGAAAAAAAA
AAGACATCATCCATGTCATTAATTTGTAACCCTGTCTCCATTACCTGTCT
GTCTGTGCCATACTTTCATGTTGCTCTGTCT
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