CF417601

Overview
NameCF417601
Unique NameCF417601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   36 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            M+ E   ++   GS FV TYEDKDGDWMLVGDVPW+MF  +CKRLRIMK +DA  L
Sbjct:  115 MIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 3
Query:   69 HGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            +GSE+  TYEDKDGDWMLVGDVPW MF+ +CKRLRI+K ++A GL
Sbjct:  156 NGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 3
Query:   45 ESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 200
            E  LKD     E V  YEDKDGDWMLVGDVPWEMFI +CKRLRIMK +DA G
Sbjct:  116 EEALKDA-ENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   78 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPRAVEK 224
            E+V  YEDKDGDWML GDVPW MF+ +CKRLRIMK +DA   GL PR V++
Sbjct:  147 EYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 3
Query:   75 SEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPR 212
            SE V  YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK +DA   GL P+
Sbjct:  136 SEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPK 183          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   51 KLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            ++ +L    EFV TYEDKDGD MLVGDVPW MF+ +CKR+R+MK+ DAIGL
Sbjct:  129 RVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:   27 GREMLSESKLKDLLHGS-EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            G + + E+    LL GS E+++TY+DKDGDWMLVGDVPW+MF+G+  RLRIMK++   G+
Sbjct:  200 GYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3
Query:   45 ESKLKDLLHGSE-FVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLA 206
            E+ +K L  GS   VLTYEDK+GDWMLVGDVPW MFIG+ +RLRIMK+++A G A
Sbjct:  188 ETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   54 LKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA--IGLAPR 212
            LK++ +G E V  YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  DA   GL P+
Sbjct:  129 LKNVENG-EHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPK 182          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:   60 DLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMK 182
            D L  SE V  YEDKDGDWML GDVPWEMF+G+CKRLRIMK
Sbjct:  117 DTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMK 157          
The following BLAST results are available for this feature:
BLAST of CF417601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA2_ARATH1.311e-1364.29Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
AX22E_PHAAU1.311e-1371.11Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA6_PEA4.982e-1371.15Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA19_ARATH4.982e-1366.67Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
AUX22_SOYBN6.507e-1372.92Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA15_ARATH8.498e-1364.71Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
IAA10_ARATH1.110e-1255.00Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA11_ARATH1.450e-1265.45Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
AX22A_PHAAU1.450e-1267.27Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
IAA5_ARATH3.229e-1278.05Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-531 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417601 ID=CF417601; Name=CF417601; organism=Citrus sinensis; type=EST; length=681bp
GGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGC
AAGTTGAAGGATCTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGA
CAAAGATGGGGATTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTA
TTGGTACATGCAAGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGC
CTAGCGCCAAGGGCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTT
CAACATATTGTTGGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGC
AGATGACAGAAAATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGG
GCATCTGCTTTTCTGTGTTACCACATTACTACGTTTACTGTGATGGATTT
TCATGTTCTGTAAGCTGTGATTGTTGTCCTGTTATTAAAATTATAAAACT
CTCGTAGACCTTGTATTTTGGAGTGAACCTCTGAGATTGGATCTCCTCAA
GGAGTTCTGACAAGTTCCTGTTCCCAACAGGTGCCTTAGTTTGTAAAGTG
CGTTGTTTGTTGAACTACTTTGTTATGCGTGCTTGTATGGTGAAAAAAAA
AAGACATCATCCATGTCATTAATTTGTAACCCTGTCTCCATTACCTGTCT
GTCTGTGCCATACTTTCATGTTGCTCTGTCT
back to top