CF417601

Overview
NameCF417601
Unique NameCF417601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   75 SEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            S+F +TYEDKDGD MLVGDVP+EMFI TCKRLRIMK ++A GL
Sbjct:  150 SDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 3
Query:   72 GSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA 194
            GS FV TYEDKDGDWMLVGDVPW+MF  +C++LRIMK ++A
Sbjct:  124 GSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   54 LKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 200
            LKD    +E V  YEDKDGDWMLVGDVPWEMF  +CKRLRIMK +DA G
Sbjct:  123 LKDA-ENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 3
Query:   78 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 215
            E  + YED DGDWMLVGDVPWEMF+ +CKR+R+M++ +A GL+  A
Sbjct:   95 EHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:   75 SEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL-APRAVE 221
            SEF +TY+DKDGD MLVGDVP++MF  TCK+LRIMK ++A GL +PR ++
Sbjct:  176 SEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 3
Query:   18 GALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIG 200
            G LG  +  E K        E+++ YEDKD DWMLVGDVPW+MF  +CKRLRI+K +DA G
Sbjct:  129 GCLGIGVAKEGKK------CEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 3
Query:   78 EFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDA 194
            +F + YEDKDGD MLVGDVPWEMFI +CK+LRIMK ++A
Sbjct:  180 QFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
The following BLAST results are available for this feature:
BLAST of CF417601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA31_ORYSJ3.229e-1276.74Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA1_ARATH5.508e-1273.17Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
AX22C_PHAAU5.508e-1271.43Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
IAA26_ORYSJ1.227e-1160.87Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA12_ORYSJ2.093e-1164.00Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA6_ARATH3.570e-1154.10Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA24_ORYSJ7.954e-1171.79Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-531 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417601 ID=CF417601; Name=CF417601; organism=Citrus sinensis; type=EST; length=681bp
GGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGC
AAGTTGAAGGATCTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGA
CAAAGATGGGGATTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTA
TTGGTACATGCAAGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGC
CTAGCGCCAAGGGCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTT
CAACATATTGTTGGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGC
AGATGACAGAAAATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGG
GCATCTGCTTTTCTGTGTTACCACATTACTACGTTTACTGTGATGGATTT
TCATGTTCTGTAAGCTGTGATTGTTGTCCTGTTATTAAAATTATAAAACT
CTCGTAGACCTTGTATTTTGGAGTGAACCTCTGAGATTGGATCTCCTCAA
GGAGTTCTGACAAGTTCCTGTTCCCAACAGGTGCCTTAGTTTGTAAAGTG
CGTTGTTTGTTGAACTACTTTGTTATGCGTGCTTGTATGGTGAAAAAAAA
AAGACATCATCCATGTCATTAATTTGTAACCCTGTCTCCATTACCTGTCT
GTCTGTGCCATACTTTCATGTTGCTCTGTCT
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