CF417604

Overview
NameCF417604
Unique NameCF417604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.340e-97
Identity = 172/203 (84.73%), Postives = 183/203 (90.15%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            F GKAVN+  S   L    R++MRKT +K+    SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVK
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVK 212          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.340e-97
Identity = 171/184 (92.93%), Postives = 175/184 (95.11%), Query Frame = 2
Query:  113 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            GRI+MRKT  K    +SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVK
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 209          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 3.991e-97
Identity = 170/198 (85.86%), Postives = 180/198 (90.91%), Query Frame = 2
Query:   65 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            GKAV +APS +EL   GR+SMRKT    VS  SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVK
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVK 211          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.517e-96
Identity = 170/202 (84.16%), Postives = 182/202 (90.10%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVK
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVK 213          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.587e-96
Identity = 171/208 (82.21%), Postives = 183/208 (87.98%), Query Frame = 2
Query:   65 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVK
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVK 221          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.587e-96
Identity = 172/200 (86.00%), Postives = 179/200 (89.50%), Query Frame = 2
Query:   65 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            GK + L PS  EL    R +MRK  T  K  SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVK
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 216          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.587e-96
Identity = 170/200 (85.00%), Postives = 177/200 (88.50%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            F GKAV    S +E+    R+SMRKT +     GSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVK
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVK 211          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.378e-96
Identity = 170/202 (84.16%), Postives = 183/202 (90.59%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVK
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 214          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.284e-95
Identity = 173/202 (85.64%), Postives = 180/202 (89.11%), Query Frame = 2
Query:   65 GKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVK
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 215          
BLAST of CF417604 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.677e-95
Identity = 169/202 (83.66%), Postives = 182/202 (90.10%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 658
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVK
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 214          
The following BLAST results are available for this feature:
BLAST of CF417604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB29_MAIZE2.340e-9784.73Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_MAIZE2.340e-9792.93Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR3.991e-9785.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT1.517e-9684.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY2.587e-9682.21Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA2.587e-9686.00Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_HORVU2.587e-9685.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.378e-9684.16Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA1.284e-9585.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH1.677e-9583.66Chlorophyll a-b binding protein 2, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-534 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417604 ID=CF417604; Name=CF417604; organism=Citrus sinensis; type=EST; length=660bp
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGAA
back to top