CF417605

Overview
NameCF417605
Unique NameCF417605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.433e-77
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  160 LAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.290e-76
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  160 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.200e-76
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+
Sbjct:   13 FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGA 172          

HSP 2 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAF
Sbjct:  160 LAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.753e-76
Identity = 134/158 (84.81%), Postives = 143/158 (90.51%), Query Frame = 3
Query:   69 GKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+
Sbjct:   15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 172          

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  160 LAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.901e-76
Identity = 135/160 (84.38%), Postives = 147/160 (91.88%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171          

HSP 2 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  159 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 207          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.360e-76
Identity = 136/156 (87.18%), Postives = 143/156 (91.67%), Query Frame = 3
Query:   69 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+L G+
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGA 168          

HSP 2 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAF
Sbjct:  156 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 204          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.862e-75
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGP SGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  160 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.432e-75
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 170          

HSP 2 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAF
Sbjct:  158 LAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAF 207          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.243e-75
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171          

HSP 2 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  159 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 207          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.689e-74
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170          

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 206          
The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB23_NICPL4.433e-7783.75Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_PETSP1.290e-7684.38Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_PETSP2.200e-7683.13Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2A_SPIOL3.753e-7684.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP4.901e-7684.38Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN8.360e-7687.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_PETSP1.862e-7582.50Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_SINAL2.432e-7582.91Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PETSP9.243e-7582.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_MAIZE2.689e-7483.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-535 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bp
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTG
GGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGG
CGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
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