CF417605

Overview
NameCF417605
Unique NameCF417605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.991e-74
Identity = 136/161 (84.47%), Postives = 143/161 (88.82%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170          

HSP 2 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAF
Sbjct:  158 LAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAF 206          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.277e-73
Identity = 130/159 (81.76%), Postives = 143/159 (89.94%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAF
Sbjct:  159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.130e-72
Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171          

HSP 2 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAF
Sbjct:  159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.130e-72
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVL G+
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGA 171          

HSP 2 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AF
Sbjct:  159 LAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAF 207          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.476e-72
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 3
Query:  117 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+L G+
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGA 150          

HSP 2 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAF
Sbjct:  138 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAF 186          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.632e-71
Identity = 129/158 (81.65%), Postives = 136/158 (86.08%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGA 169          

HSP 2 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAF
Sbjct:  157 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAF 205          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.632e-71
Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 3
Query:  117 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GRI+MRKT  K    +SGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 167          

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  155 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 203          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.381e-70
Identity = 129/166 (77.71%), Postives = 140/166 (84.34%), Query Frame = 3
Query:   69 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 179          

HSP 2 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAF
Sbjct:  167 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAF 215          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.804e-70
Identity = 129/158 (81.65%), Postives = 137/158 (86.71%), Query Frame = 3
Query:   69 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 174          

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  162 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 210          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 5.248e-70
Identity = 131/154 (85.06%), Postives = 137/154 (88.96%), Query Frame = 3
Query:   87 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVL G+
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170          

HSP 2 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAF
Sbjct:  158 LAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAF 206          
The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB29_MAIZE5.991e-7484.47Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_ARATH2.277e-7381.76Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_ARATH1.130e-7281.13Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT1.130e-7282.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.476e-7291.43Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_HORVU1.632e-7181.65Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_MAIZE1.632e-7190.14Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY1.381e-7077.71Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA1.804e-7081.65Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_ORYSJ5.248e-7085.06Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-535 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bp
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTG
GGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGG
CGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
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