CF417605

Overview
NameCF417605
Unique NameCF417605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.952e-70
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 3 
Query:   69 GKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 173

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  161 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 209
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.994e-69
Identity = 129/161 (80.12%), Postives = 139/161 (86.34%), Query Frame = 3 
Query:   81 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+L G+
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGA 183

HSP 2 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AF
Sbjct:  171 LAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAF 219
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.994e-69
Identity = 129/161 (80.12%), Postives = 139/161 (86.34%), Query Frame = 3 
Query:   81 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+L G+
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGA 183

HSP 2 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AF
Sbjct:  171 LAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAF 219
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.994e-69
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GRI+MRK+ +K    +SGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVL G+
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 166

HSP 2 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF
Sbjct:  154 LAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 202
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.431e-67
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 3 
Query:  111 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            NGGR+SMR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVL G+
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:  157 LAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.815e-66
Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 3 
Query:  132 RKTGSKSV---SSGSPWYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            +KT +K+    SSG  +YGP+R K+LGP S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+L G
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMG 157

HSP 2 Score: 68.1662 bits (165), Expect = 1.815e-66
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  529 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            MG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ F
Sbjct:  156 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTF 194
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.695e-66
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 3 
Query:  114 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            GGR+SMR+T   + +S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169

HSP 2 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MG VEGYR+ GGPLGE  DP+YPGG+FDPLGLADDP+AF
Sbjct:  158 LAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAF 206
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.005e-66
Identity = 127/156 (81.41%), Postives = 134/156 (85.90%), Query Frame = 3 
Query:   69 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGP SGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+L G+
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGA 161

HSP 2 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 642
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA
Sbjct:  149 LAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 196
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.338e-65
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 3 
Query:  117 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            GRI+MRKT +K     SGSPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVL G+
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE F
Sbjct:  157 LAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERF 205
[Close]
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.282e-65
Identity = 116/133 (87.22%), Postives = 122/133 (91.73%), Query Frame = 3 
Query:  138 TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            T  K  SS SPW+GPD VKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 133

HSP 2 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAF
Sbjct:  121 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAF 169
The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB28_PEA8.952e-7081.25Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2A_PYRPY1.994e-6980.12Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.994e-6980.12Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_ORYSJ1.994e-6988.73Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SILPR5.431e-6783.80Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLRE1.815e-6672.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI2.695e-6684.29Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_SOYBN6.005e-6681.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE1.338e-6583.10Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_PEA2.282e-6587.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-535 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bp
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTG
GGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGG
CGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
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