CF417605

Overview
NameCF417605
Unique NameCF417605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.999e-61
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 3
Query:  117 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            GR SMR+T  K+V   S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMG 168          

HSP 2 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAF
Sbjct:  157 LAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAF 205          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.692e-60
Identity = 111/138 (80.43%), Postives = 120/138 (86.96%), Query Frame = 3
Query:  120 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            R +MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169          

HSP 2 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++F
Sbjct:  158 LAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSF 206          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.961e-60
Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 3
Query:   63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVL G
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168          

HSP 2 Score: 48.521 bits (114), Expect = 3.961e-60
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 1
Query:  529 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAF 645
            MG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  F
Sbjct:  167 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTF 206          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 6.734e-60
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 3
Query:   69 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+L G
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171          

HSP 2 Score: 45.8246 bits (107), Expect = 6.734e-60
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  529 MGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAF 645
            MG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  F
Sbjct:  170 MGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTF 209          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.751e-57
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 3
Query:  204 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 111          

HSP 2 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAF
Sbjct:   99 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 147          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-55
Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 3
Query:  171 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            +YGPDR K+LGP S  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVL G
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMG 155          

HSP 2 Score: 51.2174 bits (121), Expect = 2.731e-55
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  529 MGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAF 645
            MG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ F
Sbjct:  154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTF 194          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.570e-54
Identity = 87/135 (64.44%), Postives = 101/135 (74.81%), Query Frame = 3
Query:  135 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            K  SKS SS + +YGPD       L  + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVL G
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMG 178          

HSP 2 Score: 67.3958 bits (163), Expect = 8.570e-54
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  529 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            MG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ F
Sbjct:  177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTF 215          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.893e-52
Identity = 107/157 (68.15%), Postives = 117/157 (74.52%), Query Frame = 3
Query:   66 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            + K   L P  + L      +M K  +KS  S S      RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+L G+
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGA 174          

HSP 2 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAF
Sbjct:  162 LAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAF 209          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.365e-29
Identity = 66/139 (47.48%), Postives = 79/139 (56.83%), Query Frame = 3
Query:  144 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536
            SK+VS  S     WYGPDR  +L  G L   E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A  V+L G+
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGA 185          

HSP 2 Score: 42.743 bits (99), Expect = 3.365e-29
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 1
Query:  529 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPE 639
            +G  E YRI  G   +  D L+PGG FDPLGLA DPE
Sbjct:  182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPE 216          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  372 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 54          

HSP 2 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 642
            LA W+     MG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA
Sbjct:   43 LAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEA 90          
The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB21_LEMGI1.999e-6182.01Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.692e-6080.43Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC3.961e-6063.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU6.734e-6065.61Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA1.751e-5792.79Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNTE2.731e-5572.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA8.570e-5464.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.893e-5268.15Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH3.365e-2947.48Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_PINSY1.072e-2292.59Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-535 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bp
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTG
GGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGG
CGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
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