CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAGKL+EA + I KM + PT SVW  LL+ C +H N ELA   A+++F +   + G  VL+ N YA+ GRW++ AK R  +R +G++K+   SW+E  N+ H FV+GDR H    +I + L+ + E+MEK GYV DTS VL  VD + K + +  HSERLA+A
Sbjct:  491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVA 654          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 75/164 (45.73%), Postives = 108/164 (65.85%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            G +G  +EA  +I  M + P   +W +LL  C++HGN EL    A+ + ++   +PG  VLLSN YA+AGRW + AK R +L D+G+KK  G S +E  + VH F+ GD+ H R REIY  LEE+   +EKAG+VPDTS VL++++ + K   +R+HSE+LAIA
Sbjct:  517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIA 680          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 72/163 (44.17%), Postives = 106/163 (65.03%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            GRA  L+EA+ VIE MP+A    +WG+L++ CRIHG  EL  +AA R+ EL     G  VL+SN YA   RWED    R+++ ++ V KE GLS +++  + H F+ GD+ H ++ EIY KL+E+  +++ AGYVPD   VL  V+ +EK   + +HSE+LA+
Sbjct:  492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLAL 654          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 76/163 (46.63%), Postives = 106/163 (65.03%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKL-EELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLA 676
            GRAGK++EA+ VIE MP  P+ S+WG+LL  CR+HGN  +   AA  +F L   +PG  V++SN YA A  W++  K R+M++ +GVKKE G SWV+  +++  FVAG     R  + Y+K+  EL E +EK+GY P+TS VL  VD + K   +  HSERLA
Sbjct:  485 GRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLA 647          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 74/164 (45.12%), Postives = 104/164 (63.41%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            GRAG L +A  +I  MP+ P   VWGALL+GCR+  +T+LA      +  L   + G  V LSN Y+  GRW++AA+ R M+  +G+KK  G SW+E   +VH F+A D+ H  + +IY KLE+LG EM   G+VP T FV   V+ +EK + + YHSE+LA+A
Sbjct:  461 GRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVA 624          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 74/164 (45.12%), Postives = 108/164 (65.85%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDE-KNQTIRYHSERLAI 679
            GR+G L++A+  IE MPI P+ SVWGALL  C+IH N  LA  A  R+ EL   + G +VLLSN YA  G+WE+ ++ RK +R  G+KKE G S +E    +H F++GD  H  + ++Y KL E+ E+++  GY P+ S VL+ ++ +E K Q++  HSE+LAI
Sbjct:  513 GRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAI 676          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 75/163 (46.01%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAI 679
            GRAG L EA  +I+ +P  PT S+WG+LL  CR++ N ELA  AA+++FEL   + G +VLLSN YAA  +WE+ AK+RK+LRD  VKK  G SW++  ++VHTF  G+  H R REI   L+ L  +  K GY P     L  V+  +K + +  HSE+LA+
Sbjct:  411 GRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLAL 573          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 72/170 (42.35%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG+L+ A+  I+ M + P  S+WGALL+ CR+HGN +L   A++ +FE+     G +VLLSN YA+AG+WE   + R +   +G++K  G S +E  N+V  F  G++ H    E+Y++L  L  +++  GYVPD  FVL+ V+ DEK   +  HSERLAIA
Sbjct:  593 CMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIA 762          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 75/172 (43.60%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  170 ICSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEK-AGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            +C     GRA  + EA   ++ M   PT  VW ALL  CR H   E+   AA R+ EL   +PG  VL+SN +A  GRW D  K R  ++  G++K  G SW+E   +VH F A D+ H  ++EIY+KL E+  ++E+  GYV DT FVL  VD  EK Q +  HSER+AIA
Sbjct:  728 VCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIA 899          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34
Identity = 79/172 (45.93%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMPIAPTESVWGALLTGC-RIHGN-TELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            C     GRAG+L +    IEKMP+ P   +W  +L  C R +G   EL   AA+ +F+L   +    VLL N YAA GRWED  KARK ++D  VKKE G SWV   + VH FVAGD+ H     IY+KL+EL  +M  AGYVP T F L  ++ + K + + YHSE+LA+A
Sbjct:  762 CMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVA 933          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP251_ARATH1.112e-3646.34Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH5.518e-3645.73Pentatricopeptide repeat-containing protein At1g08... [more]
PP311_ARATH7.207e-3644.17Pentatricopeptide repeat-containing protein At4g14... [more]
PP229_ARATH7.207e-3646.63Pentatricopeptide repeat-containing protein At3g14... [more]
PP219_ARATH2.739e-3545.12Putative pentatricopeptide repeat-containing prote... [more]
PP175_ARATH4.672e-3545.12Pentatricopeptide repeat-containing protein At2g29... [more]
PP364_ARATH6.101e-3546.01Pentatricopeptide repeat-containing protein At5g04... [more]
PP348_ARATH6.101e-3542.35Pentatricopeptide repeat-containing protein At4g33... [more]
PP296_ARATH7.968e-3543.60Pentatricopeptide repeat-containing protein At3g63... [more]
PP373_ARATH1.041e-3445.93Putative pentatricopeptide repeat-containing prote... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
back to top