CF417607

Overview
NameCF417607
Unique NameCF417607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTES---VWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD--RCHVRTREIYQKLEE 562
            RAG L EA  +I+KM     E+   V+ +LL+  R +GN ++A   A+++ ++ +     + LL++ YA+A RWED    R+ ++D G++K  G S +E     H F+ GD    H +  EI   L +
Sbjct:  428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQ 555          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLS 472
            RAG L+EA   +E MP+ P E+V GA+L+GC+++GN E+    A  + +L        V L+  Y+AAGR+++A   R+ ++++ + K  G S
Sbjct:  383 RAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAESLRQWMKEKQISKVPGCS 475          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/131 (30.53%), Postives = 66/131 (50.38%), Query Frame = 2
Query:  191 GRAGKLQEAISVIEKMP-IAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580
            GRAG+L EA  +I++ P  +    +   L + C +H    L    A  + E         ++L N YA+   W+ A + R  +++ G++K+ G SW+E  ++V  F A DR H+R   +Y+ L  L   ME
Sbjct:  558 GRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGHME 688          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAIS-VIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVK 454
            C     GRAG ++EA S ++++M +    +VWGALL  C +HGNT++   AA R+FEL   +     LL   Y+ A R ED  + R+M+ D+G++
Sbjct:  432 CMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLE 526          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 2
Query:  200 GKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682
            G L EA+  +E+MP+ P   VW  L+   R+HGN EL  Y A+ V     + P      S       +  D  K       + +KK +G+    + + +  F AGD       E++Q L  L   M + GYV +T   L  +D + K   +  HSER+A A
Sbjct:  405 GFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVV---EFLDPTRLNKQSREGFIPVKASDVEK-------ESLKKRSGILHGVKSS-MQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFA 554          
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/134 (29.85%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  173 CSKKWKGRAGKLQEAISVIEKMP--IAPTESVWGALLTGCRIH-GNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565
            C      RAG++  A+ +I+ +P  +    S WGA+L+GCR       + +     V EL  +     +L S+ +AA   WED A  R++++++ V+   G S V EGN    F+AGD+      E+   ++ L
Sbjct:  589 CIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSELNDVVQSL 722          
The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PPR65_ARATH4.255e-1232.81Pentatricopeptide repeat-containing protein At1g31... [more]
PP309_ARATH4.255e-1236.56Pentatricopeptide repeat-containing protein At4g14... [more]
PP398_ARATH5.557e-1230.53Pentatricopeptide repeat-containing protein At5g27... [more]
PP337_ARATH2.112e-1138.95Pentatricopeptide repeat-containing protein At4g25... [more]
PP170_ARATH2.758e-1130.43Pentatricopeptide repeat-containing protein At2g25... [more]
PP159_ARATH4.704e-1129.85Pentatricopeptide repeat-containing protein At2g17... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-537 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bp
TTTGACTCATCAAGCTTTGTAGGCAGTTCTCTGATTTCATTGTATTCTAA
GTGCGGAGTAATTGAACCGGCTTATCGGGTTTTTGAGGAAGTGCGCGTTA
GGAATCTTGGAATGTGGAATGCAATGCTGATTGCCTGCGCCCAGCACTCG
CATATGAACAAAGTGTTTGATTTGTTCAAAGAAATGGAAAGGTCGAGCGG
GGAAATTGCAGGAAGCAATTTCAGTTATTGAGAAAATGCCCATTGCACCT
ACAGAATCTGTTTGGGGAGCCTTGTTGACAGGTTGCCGAATTCATGGAAA
CACTGAATTGGCAGCCTATGCTGCAGATAGGGTCTTTGAGTTGGGCATCG
TGAGCCCAGGCATGAATGTTTTGTTATCTAATGCTTATGCTGCTGCTGGA
AGGTGGGAAGATGCAGCCAAAGCTAGGAAGATGCTTAGGGACCAAGGGGT
AAAGAAGGAAACAGGTTTGAGTTGGGTCGAGGAGGGAAATAGAGTTCATA
CTTTTGTTGCAGGAGATAGGTGCCATGTAAGAACCAGAGAGATTTATCAG
AAGTTAGAAGAGTTAGGGGAAGAAATGGAGAAAGCTGGTTATGTTCCTGA
TACNAGTTTTGTGTTGAGAAAGGTTGATGGCGATGAGAAGAATCAAACAA
TTAGGTATCATAGTGAGAGACTGGCCATTGCTT
back to top