CF417607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 42/128 (32.81%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTES---VWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGD--RCHVRTREIYQKLEE 562 RAG L EA +I+KM E+ V+ +LL+ R +GN ++A A+++ ++ + + LL++ YA+A RWED R+ ++D G++K G S +E H F+ GD H + EI L + Sbjct: 428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQ 555
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 194 RAGKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLS 472 RAG L+EA +E MP+ P E+V GA+L+GC+++GN E+ A + +L V L+ Y+AAGR+++A R+ ++++ + K G S Sbjct: 383 RAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAESLRQWMKEKQISKVPGCS 475
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12 Identity = 40/131 (30.53%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 191 GRAGKLQEAISVIEKMP-IAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEME 580 GRAG+L EA +I++ P + + L + C +H L A + E ++L N YA+ W+ A + R +++ G++K+ G SW+E ++V F A DR H+R +Y+ L L ME Sbjct: 558 GRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGHME 688
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAIS-VIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVK 454 C GRAG ++EA S ++++M + +VWGALL C +HGNT++ AA R+FEL + LL Y+ A R ED + R+M+ D+G++ Sbjct: 432 CMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLE 526
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 2 Query: 200 GKLQEAISVIEKMPIAPTESVWGALLTGCRIHGNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEELGEEMEKAGYVPDTSFVLRKVDGDEKNQTIRYHSERLAIA 682 G L EA+ +E+MP+ P VW L+ R+HGN EL Y A+ V + P S + D K + +KK +G+ + + + F AGD E++Q L L M + GYV +T L +D + K + HSER+A A Sbjct: 405 GFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVV---EFLDPTRLNKQSREGFIPVKASDVEK-------ESLKKRSGILHGVKSS-MQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFA 554
BLAST of CF417607 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 40/134 (29.85%), Postives = 67/134 (50.00%), Query Frame = 2 Query: 173 CSKKWKGRAGKLQEAISVIEKMP--IAPTESVWGALLTGCRIH-GNTELAAYAADRVFELGIVSPGMNVLLSNAYAAAGRWEDAAKARKMLRDQGVKKETGLSWVEEGNRVHTFVAGDRCHVRTREIYQKLEEL 565 C RAG++ A+ +I+ +P + S WGA+L+GCR + + V EL + +L S+ +AA WED A R++++++ V+ G S V EGN F+AGD+ E+ ++ L Sbjct: 589 CIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSELNDVVQSL 722 The following BLAST results are available for this feature:
BLAST of CF417607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417607 ID=CF417607; Name=CF417607; organism=Citrus sinensis; type=EST; length=683bpback to top |